Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01697 ATGGCTATTTTGGGTCTTGTCTTGGTTGGATTAGTTCTCTCTCTAGGATCTACTGTCTATGCATCCAATGATGGTTGGATTGATGCTCATGCTACCTTCTATGGAGGGGGTGATGCCTCTGGCACAATGGGTGGAGCATGTGGATATGGGAACTTGTATAGTCAAGGATATGGAACCAACACTGCTGCTTTAAGCACTGCTTTGTTCAATAGTGGATTAAGTTGTGGAGCATGTTTTGAGATTAAATGTGTTAATGACCAAAGGTGGTGTCTTCCAAACTCAATTGTTGTCACCGCAACAAATTTTTGTCCACCAAACAACGCACTTCCAAATAACGCCGGTGGGTGGTGTAACCCTCCTCTTCACCATTTTGATCTCTCTCAACCTGTCTTCCAACAAATTGCTCAATATAAAGCGGGAATTGTACCTGTTTCTTACAAAAGGGTCCCTTGCCAAAAGAAAGGAGGCATAAGATTCACAATCAATGGTCATTCATATTTTAACCTAGTACTAATTACCAACGTTGGAGGTGCTGGTGATGTTACTGCAGTTTCCATCAAAGGTTCAAAAACTAATTGGCAACCAATGTCTAGAAATTGGGGTCAAAATTGGCAAAGCAACTCTCACCTCGACGGACAAAGTCTCTCGTTTAAGGTCACTTCTAGCGATGGTCGGACTGTGGTTGCTAATAATGTTGCACCCGCTGGATGGTCCTTTGGTCAGACTTTCACCGGCATTCAGTTCTGA 747 0.4311 MAILGLVLVGLVLSLGSTVYASNDGWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIKCVNDQRWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQYKAGIVPVSYKRVPCQKKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSKTNWQPMSRNWGQNWQSNSHLDGQSLSFKVTSSDGRTVVANNVAPAGWSFGQTFTGIQF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01697 248 SMART dpbb_1 61 146 IPR007112 -
Trre5g01697 248 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Trre5g01697 248 Gene3D - 154 248 IPR036749 -
Trre5g01697 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Trre5g01697 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Trre5g01697 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Trre5g01697 248 FunFam Expansin 16 152 - -
Trre5g01697 248 FunFam Expansin 156 248 - -
Trre5g01697 248 Gene3D - 13 152 IPR036908 -
Trre5g01697 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Trre5g01697 248 PANTHER EXPANSIN-A15 12 247 IPR002963 GO:0009664
Trre5g01697 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Trre5g01697 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Trre5g01697 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Trre5g01697 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Trre5g01697 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Trre5g01697 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Trre5g01697 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Trre5g01697 248 CDD DPBB_EXPA_N 25 151 - -
Trre5g01697 248 Pfam Lytic transglycolase 61 146 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01697 Trre-Chr5 12383869 12385475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01697 1 248 Expansin Gene Family AT2G03090 78.629 2.88e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01697 - K20628 egr:104419919 441.81