Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01693 ATGTTCATCGCAGAGTTGCCAAAGGTTATTAAGGGAGAGTTTGATCAAGACAATGACATGCACTTTGAAACTGTTGCCCCTGTCTCCTCTGTGGTGCTCACTGATAATGACTGTCTTAATGCCAAACCGCGATCCAATGATATCTCCAATCTCTTAAATGATCAAATTCACTTTGGTGAAATGAAGGAAGTGCCTCTGGAAATGACTCCCAAATTGGGCAGTTTCAATGACAAATTAAATGCAACAGGGTCGCCAGAGGTTATCGAGGGAGAGTTTAATGAAGATGAAACTGCAGAAACTGTCACCTGTGTAGTGCTCACTGATAATGATTATTTGAAATTGTCAATATGCTTATCGTTATCTCGAACTGGACTAGGAACGAAGAGGATGGTGGTGTTCCTTAGGGATCCACTAGGGAGATTGTGGCCGGTCCTTTACCTTAACAAAACTTGGTTGACAAGTGGATGGTTAGATTTTCAAAGAGCAAATAATATTAAACCAGGTGATGTGTGCGTTTTTCGGGTTGTGAACAAGTTTGAATGTATCATTTCTGTACATATAAACCACAAGTGA 573 0.4049 MFIAELPKVIKGEFDQDNDMHFETVAPVSSVVLTDNDCLNAKPRSNDISNLLNDQIHFGEMKEVPLEMTPKLGSFNDKLNATGSPEVIEGEFNEDETAETVTCVVLTDNDYLKLSICLSLSRTGLGTKRMVVFLRDPLGRLWPVLYLNKTWLTSGWLDFQRANNIKPGDVCVFRVVNKFECIISVHINHK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01693 190 CDD B3_DNA 105 174 IPR003340 GO:0003677
Trre5g01693 190 ProSiteProfiles B3 DNA-binding domain profile. 132 190 IPR003340 GO:0003677
Trre5g01693 190 Pfam B3 DNA binding domain 115 184 IPR003340 GO:0003677
Trre5g01693 190 Gene3D - 88 190 IPR015300 -
Trre5g01693 190 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 105 187 IPR044837 -
Trre5g01693 190 SUPERFAMILY DNA-binding pseudobarrel domain 102 186 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01693 Trre-Chr5 12278626 12279711 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g01693 B3 5.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01693 - - tpra:123897020 310.457