Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01692 ATGGGTCGCAATTCACAAGTGTGTTTGTCTTGTCTTCACAACTGTCGATTCTTTCATTCTCACCGAACAACCACAGCTTCAACCTCCCCTAACTCTTTCTACAAGTTGATCATTCCTCAAAAGGATTTCAATGTTTTGTATCTTCCTCCAAAGATGAATCATATTATGTCAACCTTGATTGATGAGAAAATCAATCTCGAGGATTCAGCGGGTGGGCGAACGGTTGTTACAATATCAGAAGTTGACGGTTCTTTTGCTTTTACGGAAGGATGGGATGTTTTCTCAAAGGAGCATGGGCTTGAAATTGGAGATATTGTGGTATTCAATTGCATTAACAAGTTGAATTTTGATGTCAAGATCTATGATGAATCTGTGTGTGAAAGACTAGATTTTTCTAAAAAAATAAATGGGAGAAAGAGAGATAGAAGTGGTACGTTTGTTAGACAAAATCGCATAGAAAATATATCAGAAAATGATAATGAGGATCGAAGGGTTAAATCTAAGTGTACATCAGAACACATCGAAGACACATGTTACATAACAAGCCATATGTATCAAAATGATGATCTAGTTGTTTTTAACAAAGATCCTATGCTTGAAGAAGTGTTGGGTACAGGGGATACCTCATATGCATCTAAACTAGTATTGTCGGGGAGAAACAGTTCTCTTGGCGAGACAAACAAAAGCACGTATGACGATAGTTCTGCTTTGATACATGGACAAAATAAAGAGCACAGATCCATTATGTTCAATACCGAAGCTCAAGAGTGCCAATTTGTTGAGAGTTTAGAGTTGCCAAAGGTTATTAAGGGAGAGTTGAATCAAGATAATGAGAGTCACTTTGAAACTTCTGGAGGAAACAATTCTGTTGGTGATTCAGGCAAACATGCCTCAAATGCATCTGAACTTGAAACTTCTGGCAGAAACAATTCTGTCGGTGATTCAGGCAAAAGCGCATATGCCAAGAATTCGATTTTGAAACTTGAAGAAAACAAAGAGGGAAAATCCATCAAGTCCGAAAAGGAAATTCAAGAGTGCCTGTTTGCTGAAGGCTTAGGTACTTCATTTAACAGAGTTGCTTCTTGTTCATTTTGTTAA 1098 0.3752 MGRNSQVCLSCLHNCRFFHSHRTTTASTSPNSFYKLIIPQKDFNVLYLPPKMNHIMSTLIDEKINLEDSAGGRTVVTISEVDGSFAFTEGWDVFSKEHGLEIGDIVVFNCINKLNFDVKIYDESVCERLDFSKKINGRKRDRSGTFVRQNRIENISENDNEDRRVKSKCTSEHIEDTCYITSHMYQNDDLVVFNKDPMLEEVLGTGDTSYASKLVLSGRNSSLGETNKSTYDDSSALIHGQNKEHRSIMFNTEAQECQFVESLELPKVIKGELNQDNESHFETSGGNNSVGDSGKHASNASELETSGRNNSVGDSGKSAYAKNSILKLEENKEGKSIKSEKEIQECLFAEGLGTSFNRVASCSFC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01692 365 CDD B3_DNA 27 122 IPR003340 GO:0003677
Trre5g01692 365 Gene3D - 24 126 IPR015300 -
Trre5g01692 365 MobiDBLite consensus disorder prediction 277 316 - -
Trre5g01692 365 ProSiteProfiles B3 DNA-binding domain profile. 21 124 IPR003340 GO:0003677
Trre5g01692 365 PANTHER B3 DOMAIN-CONTAINING 28 272 - -
Trre5g01692 365 Pfam B3 DNA binding domain 46 122 IPR003340 GO:0003677
Trre5g01692 365 MobiDBLite consensus disorder prediction 278 316 - -
Trre5g01692 365 SMART B3_2 24 124 IPR003340 GO:0003677
Trre5g01692 365 SUPERFAMILY DNA-binding pseudobarrel domain 28 126 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01692 Trre-Chr5 12276062 12278372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01692 20 127 B3 DNA Binding Superfamily AT4G01580 28.571 1.53e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g01692 B3 2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01692 - - tpra:123897020 497.664