Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01685 ATGGAGAATATTGATCAACACATGGTTTGGAAATATGATCATCCAATACAAGATTATGATCCATTTGCATTTCCTCCCACATTACCTTCATATGATGAAAATAATAATAATCTTTATAGAGAAAATGCAAGTGATGGTTATTATTCAAAAGATTGGTCACATTATGGATTTCCCATACTAGATACCAATTCTTATGTCCCTTTCAAGGATAATTATTTTCCTGAATTTCAATATGAAACTGATCTTACTCAATTGCCAACACAAATAAGTGTAGAAGACTTTGATTTATGTGATGCTAAAAATTCACTTCCAATGTGGAACGAAGTTGATGCTGGATTTTATTCGGATAATAATGTGTTTTCTATAAGCAACAATATTGTAGAAAATAATGCAAAAGAAATTATGAAGGGTAAGCGTTGTAGAGAAGAGAATAGTGCAAGAATGTTAACAAGGAAGACAATTTCTGAGTATTTCTATATGCCAATTTCACAAGCTGCTAGAGAGCTCAATGTTGGTCTTACACATTTGAAGAAAAGGTGTAGGGATCTTGGAATTCAAAGGTGGCCACATAGGAAATTAATGAGCCTTCAAACCCTCATAAAGAATGTTCAAGAGCAGGGTAATGAAAGTGATGAGAAAATAAGGAATGCAGTTGAAATATTGCAAAAAGAAATGAAGAAGGTAGAGGAAAAGCCAGATTTGCAACTTGAAGAAAATACAAAAAGGCTTAGACAAGCATGTTTCAAGGCCAATTACAAGAAGAGAAGGCTCATGGTCATGAGATTAATGGATCATCAACAGTCTTTAGTCAGTGAAAGTGAAAGTGTTAATGATCACATAAGGGTTTAA 849 0.3322 MENIDQHMVWKYDHPIQDYDPFAFPPTLPSYDENNNNLYRENASDGYYSKDWSHYGFPILDTNSYVPFKDNYFPEFQYETDLTQLPTQISVEDFDLCDAKNSLPMWNEVDAGFYSDNNVFSISNNIVENNAKEIMKGKRCREENSARMLTRKTISEYFYMPISQAARELNVGLTHLKKRCRDLGIQRWPHRKLMSLQTLIKNVQEQGNESDEKIRNAVEILQKEMKKVEEKPDLQLEENTKRLRQACFKANYKKRRLMVMRLMDHQQSLVSESESVNDHIRV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01685 282 PANTHER PROTEIN RKD4 141 264 IPR044607 GO:0003700
Trre5g01685 282 ProSiteProfiles RWP-RK domain profile. 132 217 IPR003035 -
Trre5g01685 282 Pfam RWP-RK domain 149 196 IPR003035 -
Trre5g01685 282 Coils Coil 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01685 Trre-Chr5 12214656 12216139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01685 138 256 AtRKD Transcription Factor Family AT1G18790 62.500 4.08e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre5g01685 RWP-RK 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01685 - - psat:127081291 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01685 5 12214656 12216139 Trre5g01685 5 12214656 12216139 ECH
Trre15g04216 15 52819304 52820350 Trre5g01685 5 12214656 12216139 PCT