Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01682 ATGAAGAAGAGACAAGTTGTGGCTAAAACTTCATCTTCAATTACAAGAAATATTAGATATGGAGAGTGCCAAAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTTGATGGTTGTAGAGAGTTCATGGCTAGCAATGAAGAAGGAACAAGTGGGGCTCTTACATGTGCTGCTTGTGGTTGTCATAGGAACTTTCATAGAAGAGAAGTGCAAACTGAAGTTGTTTGGGAACATGCAAAAGACTTCAAGTATCATGTGGCTTCTCTTGCTCGAGAGTCGGTCAGTATTCTTAAAGAGGACTGGGATAACGTTAGTGATGATGACAGGGCACAGATTTGGAAAGGTCTTAAGGAAGTATGGGTTATTCCTACAAATGAAGCTTTTACTAAGCAAACGATGATGTACGCAGCTGAACAGATATGGAAGGCTTTTGTTAAGTCACGAGAGGACCCTTCCTTTCTGGAGAAAAGAAAGAGGGGACAAGAGGCTCAGTCGCATAACAAGCATCCTCATAGATTGTCTCAAGGGGGATATGCTTTGCTTCACAAACAAATGATGGCAGAAAAGTTGAAAGAAAGACAAGATGCAGCTGGAGGGTCACAGGTGATATACGCAAATGCTAAAGTACCCGTGCCCACGGATGAGGTTACAACAGTTGGTGAGGCCCCTAACAATTTCATTCAATGGCCGAAAAGACTTTTGCAACTTACTTCTAACAAGAAATGTGATGTTCCACCCAAAAATTCAGAACCCATCTGTCAAAAATTGGGTGTAATGGCAATTGTGGCTCATATATCTGCACCGCCATTGTATTGA 816 0.4179 MKKRQVVAKTSSSITRNIRYGECQKNHAANIGGYAVDGCREFMASNEEGTSGALTCAACGCHRNFHRREVQTEVVWEHAKDFKYHVASLARESVSILKEDWDNVSDDDRAQIWKGLKEVWVIPTNEAFTKQTMMYAAEQIWKAFVKSREDPSFLEKRKRGQEAQSHNKHPHRLSQGGYALLHKQMMAEKLKERQDAAGGSQVIYANAKVPVPTDEVTTVGEAPNNFIQWPKRLLQLTSNKKCDVPPKNSEPICQKLGVMAIVAHISAPPLY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01682 271 MobiDBLite consensus disorder prediction 152 174 - -
Trre5g01682 271 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Trre5g01682 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 149 - -
Trre5g01682 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Trre5g01682 271 MobiDBLite consensus disorder prediction 152 169 - -
Trre5g01682 271 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01682 Trre-Chr5 12174574 12183155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01682 1 79 Zinc finger-homeobox gene family AT1G18835 71.765 3.40e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre5g01682 ZF-HD_dimer 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01682 - - tpra:123890885 167.162