Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01681 ATGGGAAGACCACCTTGCTGTGAGAAAATTGGAGTTAAGAAAGGACCTTGGACTCCAGAAGAGGATATCATTTTGGTCTCTTTTATTCAAGAACATGGACCTGGGAATTGGAGATCTGTTCCCAACAAGACAGGTTTGATGAGATGTAGTAAGAGTTGTAGACTTAGATGGACCAATTATCTTAGACCAGGCATCAAAAGAGGTAATTTCAATGATCATGAAGAGAAAATGATAATCCACCTTCAAGCACTTTTGGGAAATAGATGGGCAGCCATAGCTTCTTATCTTCCACAAAGGACAGACAATGACATAAAAAACTATTGGAATACACATTTGAGGAAAAAGCTAAAGAACATTCAAATTCAAACAGGTAATAATAATAATGAAAAAGAAGAAAACACTTCTCCACAAGTTAAAGGACAATGGGAAAGAAGGCTTCAAACAGATATTCATATGGCAAAACAAGCTTTATGTGAAGCACTTTCACTTAACAATCCAAAACCTATTTTACAAGCTGAAACAAATTCAACAAATGAAAGCCAAACATCCCCTTATGCATCAAACACTGAAAACATAGCTAGATTGCTTGAAAAGTGGATGAAAAAACCCGAAAACTCGGACGAGGTGGTAACCACAGGTTCAAGTTCTAGTGAAGGAGGACAAAAAGGTCAAGGTTTTGATTCTTTGTTGAGCTTTAATTCATTCAATTCTGATTGTTCTAAATCTGTGTCAGTTGAAGAAAATAACAACTTGATTATGGATTCTTGCCTCTTTCAATATGAAAGTAAGCCAAACATAGATTCTCAAGTCCCTTTCATGTTCTTGGAGAAGTGGCTTTTTGATGATGGTGCTACTCAATGCAATGAAGATCTAATCAACATGTCATTGGAGGAAAATCAACAAGGGTTGTTTTAG 915 0.3617 MGRPPCCEKIGVKKGPWTPEEDIILVSFIQEHGPGNWRSVPNKTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKNIQIQTGNNNNEKEENTSPQVKGQWERRLQTDIHMAKQALCEALSLNNPKPILQAETNSTNESQTSPYASNTENIARLLEKWMKKPENSDEVVTTGSSSSEGGQKGQGFDSLLSFNSFNSDCSKSVSVEENNNLIMDSCLFQYESKPNIDSQVPFMFLEKWLFDDGATQCNEDLINMSLEENQQGLF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01681 304 CDD SANT 69 112 IPR001005 -
Trre5g01681 304 Gene3D - 13 66 - -
Trre5g01681 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre5g01681 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Trre5g01681 304 SMART sant 66 114 IPR001005 -
Trre5g01681 304 SMART sant 13 63 IPR001005 -
Trre5g01681 304 CDD SANT 16 61 IPR001005 -
Trre5g01681 304 FunFam MYB-related transcription factor 13 66 - -
Trre5g01681 304 MobiDBLite consensus disorder prediction 203 223 - -
Trre5g01681 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre5g01681 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre5g01681 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre5g01681 304 MobiDBLite consensus disorder prediction 207 223 - -
Trre5g01681 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre5g01681 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre5g01681 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre5g01681 304 Gene3D - 68 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01681 Trre-Chr5 12166177 12168416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01681 1 304 MYB Transcription Factor Family AT5G62470 51.622 4.63e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g01681 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01681 K09422 - pvy:116114586 399.053