Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g01681 | ATGGGAAGACCACCTTGCTGTGAGAAAATTGGAGTTAAGAAAGGACCTTGGACTCCAGAAGAGGATATCATTTTGGTCTCTTTTATTCAAGAACATGGACCTGGGAATTGGAGATCTGTTCCCAACAAGACAGGTTTGATGAGATGTAGTAAGAGTTGTAGACTTAGATGGACCAATTATCTTAGACCAGGCATCAAAAGAGGTAATTTCAATGATCATGAAGAGAAAATGATAATCCACCTTCAAGCACTTTTGGGAAATAGATGGGCAGCCATAGCTTCTTATCTTCCACAAAGGACAGACAATGACATAAAAAACTATTGGAATACACATTTGAGGAAAAAGCTAAAGAACATTCAAATTCAAACAGGTAATAATAATAATGAAAAAGAAGAAAACACTTCTCCACAAGTTAAAGGACAATGGGAAAGAAGGCTTCAAACAGATATTCATATGGCAAAACAAGCTTTATGTGAAGCACTTTCACTTAACAATCCAAAACCTATTTTACAAGCTGAAACAAATTCAACAAATGAAAGCCAAACATCCCCTTATGCATCAAACACTGAAAACATAGCTAGATTGCTTGAAAAGTGGATGAAAAAACCCGAAAACTCGGACGAGGTGGTAACCACAGGTTCAAGTTCTAGTGAAGGAGGACAAAAAGGTCAAGGTTTTGATTCTTTGTTGAGCTTTAATTCATTCAATTCTGATTGTTCTAAATCTGTGTCAGTTGAAGAAAATAACAACTTGATTATGGATTCTTGCCTCTTTCAATATGAAAGTAAGCCAAACATAGATTCTCAAGTCCCTTTCATGTTCTTGGAGAAGTGGCTTTTTGATGATGGTGCTACTCAATGCAATGAAGATCTAATCAACATGTCATTGGAGGAAAATCAACAAGGGTTGTTTTAG | 915 | 0.3617 | MGRPPCCEKIGVKKGPWTPEEDIILVSFIQEHGPGNWRSVPNKTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKNIQIQTGNNNNEKEENTSPQVKGQWERRLQTDIHMAKQALCEALSLNNPKPILQAETNSTNESQTSPYASNTENIARLLEKWMKKPENSDEVVTTGSSSSEGGQKGQGFDSLLSFNSFNSDCSKSVSVEENNNLIMDSCLFQYESKPNIDSQVPFMFLEKWLFDDGATQCNEDLINMSLEENQQGLF | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g01681 | 304 | CDD | SANT | 69 | 112 | IPR001005 | - | |
Trre5g01681 | 304 | Gene3D | - | 13 | 66 | - | - | |
Trre5g01681 | 304 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
Trre5g01681 | 304 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 233 | - | - | |
Trre5g01681 | 304 | SMART | sant | 66 | 114 | IPR001005 | - | |
Trre5g01681 | 304 | SMART | sant | 13 | 63 | IPR001005 | - | |
Trre5g01681 | 304 | CDD | SANT | 16 | 61 | IPR001005 | - | |
Trre5g01681 | 304 | FunFam | MYB-related transcription factor | 13 | 66 | - | - | |
Trre5g01681 | 304 | MobiDBLite | consensus disorder prediction | 203 | 223 | - | - | |
Trre5g01681 | 304 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 65 | IPR017930 | - | |
Trre5g01681 | 304 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 66 | 116 | IPR017930 | - | |
Trre5g01681 | 304 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
Trre5g01681 | 304 | MobiDBLite | consensus disorder prediction | 207 | 223 | - | - | |
Trre5g01681 | 304 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
Trre5g01681 | 304 | Pfam | Myb-like DNA-binding domain | 67 | 112 | IPR001005 | - | |
Trre5g01681 | 304 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
Trre5g01681 | 304 | Gene3D | - | 68 | 180 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g01681 | Trre-Chr5 | 12166177 | 12168416 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g01681 | 1 | 304 | MYB Transcription Factor Family | AT5G62470 | 51.622 | 4.63e-108 | 316 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Trre5g01681 | Myb_DNA-binding | 4.3e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g01681 | K09422 | - | pvy:116114586 | 399.053 |