Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01675 ATGGTTCACGTCTCGTTTTACCGCAACTATGGTAAAACGTTTAAGAAACCTCGTCGTCCATACGAAAAGGAACGTTTAGATGCTGAATTGAAACTCGTCGGAGAGTATGGACTAAGGTGTAAACGCGAATTATGGAGAGTACAGTATGTTCTGAGTCGAATTCGAAACAATGCTAGAAATCTTCTTACTCTTGATGAGAAGAATCCTAGAAGGATTTTTGAAGGTGAAGCATTGCTTCGAAGAATGTTTCGTTATGGATTACTCGATGAAACTCAGAATAAGCTTGATTATGTTCTTGCTCTTACTGTTGAGAATTTTCTAGAACGTCGTCTTCAGACTCTTGTTTTTAAATCTGGTATGGCTAAGTCTATTCATCATGCTAGGGTTCTCATCAGACAGAAGCATATCAGGGTTGGAAGGCAGGTTGTGAACATCCCCTCTTTCTTGGTGAGGGTTGACTCACAGAAGCATATTGACTTTTCACTTACAAGTCCATTTGGTGGTGGACGTGCCGGAAGAGTGAAGCGAAAGAACCTCAATGCTGCTGCCAAGAAGGCTTCCGGCGAAGGCTATGAGGAGGATGAGGATTAA 591 0.4196 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPFGGGRAGRVKRKNLNAAAKKASGEGYEEDED 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01675 196 Gene3D - 108 165 IPR036986 GO:0003723
Trre5g01675 196 Pfam S4 domain 109 152 IPR002942 GO:0003723
Trre5g01675 196 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Trre5g01675 196 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Trre5g01675 196 CDD S4 109 153 - -
Trre5g01675 196 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Trre5g01675 196 SMART s4_6 109 180 IPR002942 GO:0003723
Trre5g01675 196 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trre5g01675 196 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Trre5g01675 196 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Trre5g01675 196 ProSiteProfiles S4 RNA-binding domain profile. 109 180 - -
Trre5g01675 196 FunFam 40S ribosomal protein S9 108 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01675 Trre-Chr5 12103222 12104943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01675 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.909 8.90e-125 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01675 K02997 - gmx:100305663 357.836