Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01670 ATGAGAAATGGAAACAGACACAATGAATCTGCTAGCTTCTCCACTCAAGCAAACGCGCTTCTTAGGAAGAACTTAACCTTCCAGAAACGAAATGTGAAGACAAACGTTAGGCTGATCTTGTTCCCATTTGTGCTGTGTATATTGCTGCTACTACTTCAAAATCTGCTCAATAAACAATTTGATAAGGCCAAAAATAAGTGCGGATGCATTTGTACCAAGACACAAGGGGAACAATGCCTGGAGAAAGAATGTGGGGTTCAATATTCGGATGTTGACCAAGTTGGCACTTGTCCTATTACTAACCCTCCTGAATGGCCTCCATTGTTGCAAACTCCTGATCCACAATACCGCGCTGTTAGAACAGATTTTCTTCCGTTTTCAGATTTTCCAAACCCCTTATGCAGAAACAATGGCTCATGTCCACTCACTATGCTCTTTACTGGCACTAATCAGACTTTCGGAGAAGTCTTGTCAGGGAATATGATACCAAGTACTTTTGGTATAAACAACGCGGATGTTATGGATAGTTTGGCGAAAAATGTCTTGGGATCAGCATCAGAGACAGAACACACCAATTTTCTGGAGCCTGCTTTCTTTTCAGATCTTCCCATTTACTATCTACAACGTCAATGCGGAAAGAACTCTACATTCTCCATTCCTATTCAGATATCAACCACTAGCAGGCAGCAAGAGTTAAGATGTGCTCAGGCTTTACGGTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTATATAAAGGTTATAGAAAAGGTAACACGGAGAGGAAGATCAATGAGATTGTTGCAGGTTATGATTTTCTAAATTCAAATGAGAATATATTTAATGTCAGTATATGGTACAACGCAACTTATAAAAATGACACCGGCTTTGATCGTATTTCATTGGCACGGATTCCTCGTTCAGTTAATTTGGTATCAGATGCCTACCTTCAGTTTCTGTTGGGACCTGGTACCAAAATGTTATTCGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCACGATTAAGTTTGATTTGGCTTCTCTTTTGGGCGGTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTGTTGTCCTCACATCATTAGTTTATGAGAAGCAACAAAATTTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGTCCATATTGGATGATTTCTTATGGTTATTTTTTCGCCATATCAGTTATCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGTTTAAAATTCTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAATTTACAAATTTCACTGGCATTTTTATTGGCCTCCCTATTTTCAAATGTCAAGACCGCTACAGTGATTGCATATATCGGTGTTTTTGGAACTGGGCTATTAGCTGGTTTTCTTTTCCAATTTTTTGTTCAAGATACATCCTTTCCAAATGGATGGATCATTGTTATGGAGTTATATCCTGGATTTGCTTTATATCGTGGGTTATATGAATTTTCACAAGCTTCTTTTAGTGGAGATACTTTGGGGACTCATGGTATGCGATGGGGAGATCTCAGTGATAGCACAAATGGCATGAAAGAGGTCTTGATTATCATGTTTGTGGAGTGGTTATTGGTTCTATTCTTTGCTTATTACGTCGATCAAGTTTTGTCAACAGGAAGTTGGAAAAGTCCTCTTTTTTTCTTGAAAAGATTTCAGAAAAATCCTAGTTCATCTTTTCGGAAGCCTAGTATCCAAAGGCAAGGATCTAAAGTTTTTGTTACAACTGAGAAACCAGATATTCATCAAGAGACGGAGAAGGTGGAGCAACTGCTACTTGAACCAACTATGAATCATGCAATTGTTTGTGACAAACTGAGAAAAGTTTATCCAGGGAGGGATGGTAACCCAGAGAAATATGCAGTGAGAGAGTTGTCGCTTGCTTTGCCTCAAGGGGAATGCTTTGGCATGCTTGGTCCCAACGGTGCTGGGAAGACTTCTTTTATCAACATGATGATAGGTCTTACGAAGCCTACCTCAGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTAATATGAATGGAATATATACTAGCATGGGTGTATGCCCCCAGAATGACTTGCTGTGGGAAGCCTTGACAGGAAGAGAGCACTTACTCTTTTATGGCAGACTTAAAAATCTTAAAGGCTCTGACTTAACACAAGCAGTGGAAGAATCTTTGAAAAGCGTAAACCTTTTTCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAATATAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATATCATTGATCGGAGATCCTAGAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCGTCAAGAAAGAATTTATGGAAAGTTGTTAATCGTGCAAAACAAGACCGTGCAATCATTCTTACTACACATTCAATGGAGGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGAAGGTAGCTTTCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGAAGATATGGAGGAACTTATGTGTTCTCAATGGCAACATCTATTGATCATGAAAAAGATGTTGAGAAATTGGTGCAACAACTCTCACCAAATGCTAAGAAGATTTACCATATCTCTGGTACACAGAAGTTTGAACTGCCAAAAGATGAGGTTAGAATATCTAATGTATTCCAAGCTGTTGAAACTGCAAAAGGAAACTTCCCAGTTTCTGCATGGGGTTTAGCTGACACTACATTGGAAGATGTCTTCATTAAGGTTGCTCGTGAGGCTCAGCCATATGATACTTTGTCATAA 2850 0.3912 MRNGNRHNESASFSTQANALLRKNLTFQKRNVKTNVRLILFPFVLCILLLLLQNLLNKQFDKAKNKCGCICTKTQGEQCLEKECGVQYSDVDQVGTCPITNPPEWPPLLQTPDPQYRAVRTDFLPFSDFPNPLCRNNGSCPLTMLFTGTNQTFGEVLSGNMIPSTFGINNADVMDSLAKNVLGSASETEHTNFLEPAFFSDLPIYYLQRQCGKNSTFSIPIQISTTSRQQELRCAQALRLWRNSSSEVNNELYKGYRKGNTERKINEIVAGYDFLNSNENIFNVSIWYNATYKNDTGFDRISLARIPRSVNLVSDAYLQFLLGPGTKMLFEFVKEMPKPETTIKFDLASLLGGLFFTWVILQLFPVVLTSLVYEKQQNLRIMMKMHGLGDGPYWMISYGYFFAISVIYMLCFVIFGSVIGLKFFTMNDYSIQFVFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPNGWIIVMELYPGFALYRGLYEFSQASFSGDTLGTHGMRWGDLSDSTNGMKEVLIIMFVEWLLVLFFAYYVDQVLSTGSWKSPLFFLKRFQKNPSSSFRKPSIQRQGSKVFVTTEKPDIHQETEKVEQLLLEPTMNHAIVCDKLRKVYPGRDGNPEKYAVRELSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTNMNGIYTSMGVCPQNDLLWEALTGREHLLFYGRLKNLKGSDLTQAVEESLKSVNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKNLWKVVNRAKQDRAIILTTHSMEEAEVLCDRLGIFVEGSFQCIGNPKELKGRYGGTYVFSMATSIDHEKDVEKLVQQLSPNAKKIYHISGTQKFELPKDEVRISNVFQAVETAKGNFPVSAWGLADTTLEDVFIKVAREAQPYDTLS 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01670 949 CDD ABC_subfamily_A 631 852 - -
Trre5g01670 949 Gene3D - 618 893 IPR027417 -
Trre5g01670 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 864 IPR003439 GO:0005524
Trre5g01670 949 SMART AAA_5 657 840 IPR003593 GO:0016887
Trre5g01670 949 Pfam ABC transporter 649 793 IPR003439 GO:0005524
Trre5g01670 949 FunFam ABC transporter A family member 7 616 892 - -
Trre5g01670 949 Pfam ABC-2 family transporter protein 346 557 IPR013525 GO:0016020|GO:0140359
Trre5g01670 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 855 IPR027417 -
Trre5g01670 949 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Trre5g01670 949 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 593 943 IPR026082 GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01670 Trre-Chr5 12060862 12068006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01670 537 856 Calmodulin-binding Proteins AT2G36910 22.581 6.20e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01670 - - gmx:100805474 1604.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01670 5 12060862 12068006 Trre5g01670 5 12060862 12068006 ECH