Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01668 ATGGATTACTACAACATCCTAAAAGTGAATCGAAATGCAACCGAAGACGATTTAAAAAAATCATACAAAAAACTTGTATTGGTATGGCATCCAGACAAAAACCCTATCAACAAAACCGAAGCTGAAGCCAAATTCAAACTCATTTCAGAAGCTTATGATGTTTTAAGCGATCCACAGAAACGTAAGATCTACGATCGTTACGGTGAAGAAGCGTTAAAATCGGGTGAAGTTCCTCCACCATCTCAGAAACATTCTTCTTATGCTGCTTCTTCATCTTCTTCTTCGTCTTCGCGACCGTATAGGAATAAACACCCTCAGAATAATACGACGTCGTTTCGGTTTAATCCTAGGGATGCGGAAGATATTTATGCTGAGATCTTTGGTGAAGGTGGTCCGGAAAATGTGGGGAATCGTAGGACATCGAATGGTGTGCCGGCTGGTGGTAGTGGTGGTGGTCAGGCGAGGAGGAAGGCTGCTCCTGTTGAGAGGCCATTGCCTTGTAGTTTGGAAGATCTTTATACAGGGGTTGATAAGAAGATGAAGATTTCTAGGACAATTACTGATTTTTTTGGGAAGAGTCGGACTGAGGTCGAGATTTTGACTATTAAACTAAAACCTGGCTGGAAAAAAGGAACAAAGGTTACCTTTCCAGAGAAGGGTGACCAGGAGCATGGTGTCATCCCGGCAGACATTATTTTTGTAATTGAAGAGAAACCACATGTTCGTTATACAAGGGATGGTCATGATTTGATTATTAACCAAAGGATAAGTCTTTTTGACGCTCTTACAAATAAAACGTTAGAAATCCCCACCTTGGATGGAAGGAATCTCATGGTCGCATTGCCTATAGTCACACCTGGCTATGTGCACGAAGTCCCTAACGAAGGAATGCCTATATCCAGAGAACCTGGGAGGAAAGGGGTTTTGAAAATTAAGATTGAAGTCAAGTATCCCACGAATCTAACTCCTCAGCAAAAAATTGATCTAAGGAGAGCCTTAGGTTGA 1005 0.4179 MDYYNILKVNRNATEDDLKKSYKKLVLVWHPDKNPINKTEAEAKFKLISEAYDVLSDPQKRKIYDRYGEEALKSGEVPPPSQKHSSYAASSSSSSSSRPYRNKHPQNNTTSFRFNPRDAEDIYAEIFGEGGPENVGNRRTSNGVPAGGSGGGQARRKAAPVERPLPCSLEDLYTGVDKKMKISRTITDFFGKSRTEVEILTIKLKPGWKKGTKVTFPEKGDQEHGVIPADIIFVIEEKPHVRYTRDGHDLIINQRISLFDALTNKTLEIPTLDGRNLMVALPIVTPGYVHEVPNEGMPISREPGRKGVLKIKIEVKYPTNLTPQQKIDLRRALG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01668 334 Gene3D - 240 319 - -
Trre5g01668 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 333 - -
Trre5g01668 334 Pfam DnaJ C terminal domain 162 318 IPR002939 -
Trre5g01668 334 FunFam DnaJ subfamily B member 13 240 319 - -
Trre5g01668 334 SUPERFAMILY Chaperone J-domain 1 79 IPR036869 -
Trre5g01668 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 326 IPR008971 GO:0006457|GO:0051082
Trre5g01668 334 Gene3D - 160 238 - -
Trre5g01668 334 PRINTS DnaJ domain signature 22 37 IPR001623 -
Trre5g01668 334 PRINTS DnaJ domain signature 4 22 IPR001623 -
Trre5g01668 334 PRINTS DnaJ domain signature 40 60 IPR001623 -
Trre5g01668 334 PRINTS DnaJ domain signature 60 79 IPR001623 -
Trre5g01668 334 SMART dnaj_3 1 60 IPR001623 -
Trre5g01668 334 MobiDBLite consensus disorder prediction 128 160 - -
Trre5g01668 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 240 IPR008971 GO:0006457|GO:0051082
Trre5g01668 334 MobiDBLite consensus disorder prediction 71 115 - -
Trre5g01668 334 Gene3D DnaJ domain 1 140 IPR036869 -
Trre5g01668 334 FunFam Dnaj homolog subfamily b member 157 238 - -
Trre5g01668 334 CDD DnaJ_C 159 321 - -
Trre5g01668 334 MobiDBLite consensus disorder prediction 79 115 - -
Trre5g01668 334 CDD DnaJ 2 57 IPR001623 -
Trre5g01668 334 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Trre5g01668 334 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Trre5g01668 334 Pfam DnaJ domain 2 65 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01668 Trre-Chr5 12048430 12051901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01668 3 72 C2H2 Transcription Factor Family AT1G74250 35.135 7.12e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01668 K09510 - gmx:100781572 427.172