Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01664 ATGCTGTGCAGAAAGCAACTTGTCGATCTTTTGGTGCATTTTCGGGATAGTGAAGGAGAAACGATGTCAAGGAGAGCTACATACTGGTGTCATACATGCAGGCAGCCAATCCTGCTAGCAGGGAGGGATGCCCTTTGCCCTTACTGCGATGGAGGATTCGTGCAAGAAATTAATGAGTTGCGAGGACTTGCATCGTCATCACAGATGGAAGAGTTTCAGGACGATTCTGATATTTTTGACGCTATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAGTTGGGTTTAGAGATGCTGTCGATAGTTACATGAGGCAAAGAATGGATGGTAGAAACACAAACTTTGATGCCAGAAGAAGATCTGTGTCCGGTTCCGTTCCAATTCCTGAACAAACTTGGGGTGTTTTTAGTTCTGCCGGTCGTTACTTAATATTTCATGACCAAACACCTAACTCAAGAGGCAATCCTAGGCATGTTGATTTTGGTGAATACTTTATGGATCCTGGACTCGATGAACTTATCGAACAACTCAATACGAACGGTCGTGGTCCAGCCCCGGCCTCACAATCTTCAATTGAAGCAATGCCTACCATTAAGATCACACAAACACATCTTCACTCTGATTCACACTGTCCAATTTGTATAGAAAGGTTTGAACTCGGCTCTAAGGCAAGGGAAATGGCATGCAAGCATATTTACCACTCGGACTGCATCGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCGCCTCATGGACGTGGTAGTTCTCGTGGAAGGAATGGCAATAGTACCGGTCAAAACGGTAATGGCCGAGGAAGGAGAAATCCATTGTCGTTTTTGTGGCCATTTCGTTCTTCCAGTTCAAATACTAATCACTGA 903 0.4452 MLCRKQLVDLLVHFRDSEGETMSRRATYWCHTCRQPILLAGRDALCPYCDGGFVQEINELRGLASSSQMEEFQDDSDIFDAIHAVVSQRGSVPRVGFRDAVDSYMRQRMDGRNTNFDARRRSVSGSVPIPEQTWGVFSSAGRYLIFHDQTPNSRGNPRHVDFGEYFMDPGLDELIEQLNTNGRGPAPASQSSIEAMPTIKITQTHLHSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGRGSSRGRNGNSTGQNGNGRGRRNPLSFLWPFRSSSSNTNH 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01664 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 259 IPR013083 -
Trre5g01664 300 Pfam Ring finger domain 211 253 IPR001841 -
Trre5g01664 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 257 - -
Trre5g01664 300 MobiDBLite consensus disorder prediction 258 300 - -
Trre5g01664 300 Pfam zinc-ribbon 27 57 IPR039525 GO:0061630
Trre5g01664 300 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Trre5g01664 300 SUPERFAMILY RING/U-box 192 258 - -
Trre5g01664 300 SMART ring_2 212 252 IPR001841 -
Trre5g01664 300 MobiDBLite consensus disorder prediction 264 281 - -
Trre5g01664 300 FunFam E3 ubiquitin-protein ligase RING1-like 174 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01664 Trre-Chr5 12003128 12004759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01664 172 292 C3H Transcription Factor Family AT1G68180 39.669 1.16e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01664 K11982 - cam:101496968 457.218