Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01658 ATGGAAAAAGATTACGACAAAGAGACCGAAAAGATGATAAAAAGATCAAGAAGTTCACTGTCCAACGATGAAGATGATGATCATGATCATGACGATGATGATGCTACCATGATGAAGAAGCAAGAAGCTCTTGTTCAAAACTCACACAACTGCAATATTTGTGGCAAGAGTTTTAGTAATGGAAAAGCATTAGGTGGCCATAGAAGATCTCACTTTCTTAAGAAGAAACCTAATAATCAATCACCAGAGCTGAAAACCCCAAGTAAGCATAATATTAGGGTTAGTTGTTTTAATGATGATGAAGATATTAGGGTTATTAGTTGTTATATTTGCAATAAGAAGTTTCCAACAAAGAATGCTTTGTATGGTCACATGAGATCTCATCCTGGTAGGGTTTGTAAAGGAGTAAGTCCTCCTTCAAATTATCATATTCAAAATTCTTCTTCAAACAATTCTAATAAAAAAGAAGATGATGACGATGATGATGACGAGGATGGTAATTTTTCTTTACCAAGATGGAAAAAGAGGGATAAAAGAGGTAGAAAATGTATTGGTAGTGTTGAAGCTGCGAAAAACCTATTGCATCTTCGTCACAACGGTGAGGTTTCGGGTTTGAACTCACAGAGATCTGAATTTTCACTTCCGATTAAAAAAAGGGATTTTTTTGTTGATGAGTCATCATCAAATGGGAATGGTAAGAAGGAGTTTGCGGTGAACAAGATTAAATTTGTTTTTAGTGGTTCATTGAAGATTGAAAACAAAAGTGATGATGATGATCAGGATGAGAGTGACAATATTAGTGGTAAGAAACTAAAGACAAGTGAAGAGCAAAAAACTTTTAACTTTGATTTGAATGAGCCATATGTTATGGAGGATTAA 879 0.3436 MEKDYDKETEKMIKRSRSSLSNDEDDDHDHDDDDATMMKKQEALVQNSHNCNICGKSFSNGKALGGHRRSHFLKKKPNNQSPELKTPSKHNIRVSCFNDDEDIRVISCYICNKKFPTKNALYGHMRSHPGRVCKGVSPPSNYHIQNSSSNNSNKKEDDDDDDDEDGNFSLPRWKKRDKRGRKCIGSVEAAKNLLHLRHNGEVSGLNSQRSEFSLPIKKRDFFVDESSSNGNGKKEFAVNKIKFVFSGSLKIENKSDDDDQDESDNISGKKLKTSEEQKTFNFDLNEPYVMED 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01658 292 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Trre5g01658 292 SMART c2h2final6 106 128 IPR013087 -
Trre5g01658 292 SMART c2h2final6 49 71 IPR013087 -
Trre5g01658 292 MobiDBLite consensus disorder prediction 252 272 - -
Trre5g01658 292 Pfam C2H2-type zinc finger 49 71 - -
Trre5g01658 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 130 IPR013087 -
Trre5g01658 292 SUPERFAMILY beta-beta-alpha zinc fingers 49 128 IPR036236 -
Trre5g01658 292 Gene3D Classic Zinc Finger 105 167 - -
Trre5g01658 292 Gene3D Classic Zinc Finger 26 104 - -
Trre5g01658 292 MobiDBLite consensus disorder prediction 1 24 - -
Trre5g01658 292 MobiDBLite consensus disorder prediction 132 172 - -
Trre5g01658 292 Pfam C2H2-type zinc finger 107 128 - -
Trre5g01658 292 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Trre5g01658 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Trre5g01658 292 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 27 291 IPR044653 GO:0003700
Trre5g01658 292 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01658 Trre-Chr5 11974633 11975511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01658 46 139 C2H2 Transcription Factor Family AT2G26940 34.821 6.18e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g01658 zf-C2H2_6 9.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01658 - - tpra:123915298 366.311