LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g01656	ATGACAATGGCTGCCCCAGGGCACCTCAACGTCACTGAATCTCCTTCCCGTGGATCCCGCAGCGTTGATTGTTTCGAGAAATTGGAGCAAATCGGCGAAGGAACCTATGGTCAGGTTTACATGGCCCGAGAGATTGAAACCGGTGAAATTGTTGCTTTGAAGAAAATAAGAATGGACAACGAGAGAGAAGGGTTTCCTATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTAATCAAGCTGAAGGAAATCGTCACGTCTCCAGGTCCTGAGAAAGATGATCAAGGGAGGCCAGATGGCAACAAATACAAAGGGGGCATATATATGGTCTTCGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGGCCTGGCATGAGATTTACTGTCCCCCAGATTAAGTGTTACATGAGGCAACTTTTGACAGGACTTCATTATTGTCATGTCAATCAAGTTCTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGACAATGAAGGTAATCTGAAACTGGCAGATTTTGGATTGGCTCGGTCGTTTTCGAATGAGCATAATGCAAACCTTACAAATCGAGTCATCACATTATGGTACAGACCCCCTGAGTTACTACTGGGGACAACAAGGTACGGGCCAGCTGTGGATATGTGGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTCATGGGAAGCCCATCTTTCCTGGAAAAGACGAGCCAGAGCAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGCGAACTGGCCTGGAGTTACTAAGACTCCTTGGTACAATCAGTTTAAGCCAACAAGACCGATGAAAAGGCGTCTGAGAGAAGTTTTCAGACATTTTGATCGCCATGCATTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCAGCTCAGAGAATTCCTGCCAAGGACGCACTTGATGCCGAATACTTCTGGACTGATCCATTACCATGTGATCCCAAGAGTTTACCCAAGTACGAGTCATCACATGAGTTTCAGACCAAGAAAAAGCGTCAGCAGCAACGGCTGAATGAAGAAAATGCCAAACGTCTTAAAATGCAGCATCCACAGCAGCATACCCGTCTTCCGCCGATTCAGCAGGGTGGACAACATGGCCAAATGCGGCAAGGTCCTTCTCACCCTGTTCATGGTTCTCAACCAGCAGTTGCTGCTGGACCAAGCCATCATTATGGGAAGCCTCGAGGGCCCTCTGGTGGGCCAGGAAGATATCCTCCTGGTGGGAACCCTAGTGGGGGATACAATCATCCAAATCGTGGAGGTCAAGGAGGGGGTGCTGGTTATGGAAGTGGACCATATCCTCCTCAAGCACGAGGAGCACCTTATGGGTCTAGTGGTATGCCTGCAGGACCTGGCGGTGGCGGTCCTCGTGGTGGAGGTGGCAGTGGCTATGGAGTTGGAGGTGGTCCTCCAAATTATCCTCAAGGTGGTCCTCCATATGGTGGATCAGGTGGTGGTCGAGGGTCAAACATGATGGGTGGGAATCGCAATCAACAGTATGGTTGGCAGCAGTAG	1572	0.4796	MTMAAPGHLNVTESPSRGSRSVDCFEKLEQIGEGTYGQVYMAREIETGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEANWPGVTKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRIPAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRLNEENAKRLKMQHPQQHTRLPPIQQGGQHGQMRQGPSHPVHGSQPAVAAGPSHHYGKPRGPSGGPGRYPPGGNPSGGYNHPNRGGQGGGAGYGSGPYPPQARGAPYGSSGMPAGPGGGGPRGGGGSGYGVGGGPPNYPQGGPPYGGSGGGRGSNMMGGNRNQQYGWQQ	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g01656	523	MobiDBLite	consensus disorder prediction	1	20	-	-
	Trre5g01656	523	CDD	STKc_CDK9_like	25	324	-	-
	Trre5g01656	523	ProSitePatterns	Protein kinases ATP-binding region signature.	31	54	IPR017441	GO:0005524
	Trre5g01656	523	FunFam	Cyclin-dependent kinase C-2	122	364	-	-
	Trre5g01656	523	Coils	Coil	342	362	-	-
	Trre5g01656	523	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	159	171	IPR008271	GO:0004672\|GO:0006468
	Trre5g01656	523	MobiDBLite	consensus disorder prediction	372	387	-	-
	Trre5g01656	523	MobiDBLite	consensus disorder prediction	335	523	-	-
	Trre5g01656	523	SUPERFAMILY	Protein kinase-like (PK-like)	20	332	IPR011009	-
	Trre5g01656	523	Pfam	Protein kinase domain	25	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g01656	523	Gene3D	Phosphorylase Kinase; domain 1	12	121	-	-
	Trre5g01656	523	Gene3D	Transferase(Phosphotransferase) domain 1	122	364	-	-
	Trre5g01656	523	FunFam	Cyclin-dependent kinase C-2	12	121	-	-
	Trre5g01656	523	ProSiteProfiles	Protein kinase domain profile.	25	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g01656	523	MobiDBLite	consensus disorder prediction	337	366	-	-
	Trre5g01656	523	PANTHER	CELL DIVISION PROTEIN KINASE	23	330	-	-
	Trre5g01656	523	MobiDBLite	consensus disorder prediction	509	523	-	-
	Trre5g01656	523	SMART	serkin_6	25	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g01656	Trre-Chr5	11963735	11968214	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g01656	1	523	Core Cell Cycle Gene Families	AT5G10270	76.749	0.0	775

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Trre5g01656		Pkinase	4.8e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g01656	K08819		-	gmx:100793565	845.114