Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01652 ATGTCAACCATCGGGAAACTCAACACGGTTGATTCGCCTGCATCAGGTTCCCGGAGTGTCGATTGTTTTGAGAAATTGCAACAAATCGGCGAAGGAACCCACGGTCAAGTTTACATGGCTCGAGAAATCAAAACTGGTGAAATTGTTGCTCTCAAGAAAATACGAATGGACAATAAGAGAGAAGGGTTTCCTATGACTGCTATACGTGAAATCAAAATTCTAAACAAATTACACCATGAAAATGTCATCAAGTTGAAAGAGATTGTCACGTCTCCAGTTCGTGAGAAAGATGATCAAGGGAGGCCAGATGAAAACAAATATAAAGGTGGCATATATATGGTCTTTGAATATATGGACCATAATTTAAAACAACTTGTTGACCGGCCTGGCATGAGATTTACCATTCCCCAGATTAAGTGCTACATGAGGCAGCTTTTGACCGGACTGCACTATTGTCATGTCAATCAAGTTCTTCATCGTGATATCAAAGGCTCAAATCTTCTTATAGATAATGAAGGGAATCTGAAGCTGGCAGATTTTGGACTGGCACGGTCATTTTCAAATGAGCACAACGCGAACCTTACAAATCGAGTCATCACATTATGGTACAGACCCCCTGAATTACTACTGGGAGCAACAAGGTATGGGCCAGCTGTAGACATGTGGTCTGTTGGTTGCATTTTCGCTGAGCTTCTTCACGGGAAGCCTATCTTTCCTGGAAAAGACGAGCCAGAGCAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAAATGAGGCGAACTGGCCCGGAGTTCAAAACACTCCTTTGTATAATCAGTTTAAGCCGACAATACCGATGAAAAGGCGCCTGGGGGAAGTTTTCAGACGTTTTGATCCCAATGCATTGGACTTGTTGGAGAAGATGCTCACACTTGATCCTGCTCAGAGAATTCTTGCCAAAGACGCACTTGATGCCGAGTACTTCTGGACTGATCCATTACCATGTGATCCCAAGAGACTACCATACATGAGAACTAGCTGTTTCAATTGTAAGATGAAGAATGAAAATATCAACTTGCTTAGTTCTACTTGGAAAAGACGGATTTTGTGTCTCAATTGCTTGATGAAATCCACTACAACAAACATGCACACACAGAGAAAATGA 1146 0.4197 MSTIGKLNTVDSPASGSRSVDCFEKLQQIGEGTHGQVYMAREIKTGEIVALKKIRMDNKREGFPMTAIREIKILNKLHHENVIKLKEIVTSPVREKDDQGRPDENKYKGGIYMVFEYMDHNLKQLVDRPGMRFTIPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGATRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPNEANWPGVQNTPLYNQFKPTIPMKRRLGEVFRRFDPNALDLLEKMLTLDPAQRILAKDALDAEYFWTDPLPCDPKRLPYMRTSCFNCKMKNENINLLSSTWKRRILCLNCLMKSTTTNMHTQRK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01652 381 Gene3D Transferase(Phosphotransferase) domain 1 120 353 - -
Trre5g01652 381 CDD STKc_CDK9_like 23 322 - -
Trre5g01652 381 Pfam Protein kinase domain 23 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01652 381 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Trre5g01652 381 SUPERFAMILY Protein kinase-like (PK-like) 18 330 IPR011009 -
Trre5g01652 381 ProSiteProfiles Protein kinase domain profile. 23 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01652 381 SMART serkin_6 23 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01652 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Trre5g01652 381 Gene3D Phosphorylase Kinase; domain 1 11 119 - -
Trre5g01652 381 FunFam Cyclin-dependent kinase C-2 10 119 - -
Trre5g01652 381 PANTHER CELL DIVISION PROTEIN KINASE 21 328 - -
Trre5g01652 381 FunFam Cyclin-dependent kinase C-2 120 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01652 Trre-Chr5 11940192 11944195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01652 1 371 Core Cell Cycle Gene Families AT5G10270 75.335 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre5g01652 Pkinase 2.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01652 K08819 - gmx:100793565 615.15