Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01638 ATGGTGAGGTCTGCAAGTTGTGAAAAAAACAGTGTTATCAAAAGCGGTGTTTGGATCGCAGAAGAAGACGCAAAGCCACCTACATTCGTATCGCAGCATGGTTCTGGTAATTGGACTTCTGTCCCCAAAAAAACAGGTGTTAAGAGGTGTGGAAAAAGTAGCAGGCTTAGGTTGAGTAGCTACATACCTGATCTTAAGCATGATAACTTTACATCGGAAGAAGAAGATTTAATCGTTAAGCTTCACGCAGCCATCGGTAGTAGGTGGTCTATAATAGCTCAACAACTACCTGGTAGAACAGACAATGATGTAAAGAACAATTGGAACACAAAGCTGAAAAAAAAGCTTTCTCAAATGGGGATAGATCCTGTTACTCACAAACCTTTCTCTAAACTCATTGCTGATTATGGAAATATAGGTGCTGCTACTACTGATGCTGCTAATTCACAACAAAAATTGATCGGAAACACAAACGACCGATCAATGCAATTGCGAACTAAAATGGAAACGTCGATGTTTAGAGAAGGATGTTTGTCATCAACACTATCTACCTCATCAGCTTGTTCTTCAACTTCAACACAAGGAACAACATTTTTTCCACCATTTAGTTGGAATGATTTTCTTATAGAAGGTGCTAATTTTGCACCACCTATTAATAACCTGCAAGAAGAACAACATTTAGAGAAAAAGAAAGAGGTTATGTCATCATCCTCGGATGTTTCATTTGTTGAAGCCATGCTTGATCAAGAAAATGAGATGTTTCTAAGCTTTCCTGAACTTTTGGAGGAACCATCCAATTACTGA 804 0.3843 MVRSASCEKNSVIKSGVWIAEEDAKPPTFVSQHGSGNWTSVPKKTGVKRCGKSSRLRLSSYIPDLKHDNFTSEEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGAATTDAANSQQKLIGNTNDRSMQLRTKMETSMFREGCLSSTLSTSSACSSTSTQGTTFFPPFSWNDFLIEGANFAPPINNLQEEQHLEKKKEVMSSSSDVSFVEAMLDQENEMFLSFPELLEEPSNY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01638 267 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Trre5g01638 267 CDD SANT 69 112 IPR001005 -
Trre5g01638 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre5g01638 267 Gene3D - 68 131 - -
Trre5g01638 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre5g01638 267 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Trre5g01638 267 Gene3D - 16 66 - -
Trre5g01638 267 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Trre5g01638 267 PANTHER F14D16.11-RELATED 162 267 - -
Trre5g01638 267 SMART sant 14 64 IPR001005 -
Trre5g01638 267 SMART sant 66 114 IPR001005 -
Trre5g01638 267 FunFam Os07g0634900 protein 69 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01638 Trre-Chr5 11868236 11869251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01638 1 263 MYB Transcription Factor Family AT3G28470 38.050 3.16e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g01638 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01638 K09422 - gmx:100795381 258.84