Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01628 ATGTGTAGATACATAGGAGTTGGAGAAGGAGCAAAGGTGCAAATATTTTACTATTTTGTGGAGTCACAAAGAAATCCAATCATTGATCCAATTTTACTTTGGTTTGTTGGTGGTCCTGGATGCTCTGCCCTTACAGCATTCTTTTTTGAAAATGGCCCTGTAATAATCGATCGCAATTACACAGGGGACCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATATACATAGATATGCCAGTAGGTACTGGATTTTCTTATTCAGAAACACAAGAAGGCTACTATAGCAGTGACATATTGTGGGTGGAACATTCATATACTTTTTTACAAAAGTGGTTTATTGATCATTCAAAGTTTAGGTCAAATTCTTTTTATATTGGCGCCGGCTCATATTCAGGAACACCTGCCGGTCCTCTTATTCAAAAAGTATATGAAGGATACAAAGCAGGACATGTGCCACACATAAATTTCAAAGGTTATATGCTTGCAAATGCACTTGTACTAGACGATGTTCTGAATACAAAAATGCAAGTTTTATTTGCATACCATATGACACTTATATCAAAAGAACTCTATGAGTCATTGAAAGAAAATTGTAAGGGTGATTATGTAAACATTGATCCACATAACACAAAGTGTGTCTTAGATTTTCAAGCTTATTCTGAGATACTTCGTTATATAGATGTACGACAAATTTTAGAACCTGTCTGCAAGACTACACCTGCCGTGAACCAAGTAATTCGACAACCAATTCAAGATGATCAAGAATTTCGGTGTAGAGGTTACGATCATATTCTTGTCAACTTATGGGCAAATGATGAAAATGTGCGGAAGGCCCTTTATATAAGAGAGGGAACTAAAGGGGAGTTCTTGAGATGCAACAAGACTCTGGCATACACATACAATCTAACCAATATTGTAGAATATTATCGCAATCTCACACATGCCAACCTCCAAGTTCTCGTTTATAGGTAA 993 0.3625 MCRYIGVGEGAKVQIFYYFVESQRNPIIDPILLWFVGGPGCSALTAFFFENGPVIIDRNYTGDLPKLKLNPYGWTHMLNMIYIDMPVGTGFSYSETQEGYYSSDILWVEHSYTFLQKWFIDHSKFRSNSFYIGAGSYSGTPAGPLIQKVYEGYKAGHVPHINFKGYMLANALVLDDVLNTKMQVLFAYHMTLISKELYESLKENCKGDYVNIDPHNTKCVLDFQAYSEILRYIDVRQILEPVCKTTPAVNQVIRQPIQDDQEFRCRGYDHILVNLWANDENVRKALYIREGTKGEFLRCNKTLAYTYNLTNIVEYYRNLTHANLQVLVYR 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01628 330 Gene3D alpha/beta hydrolase 3 330 IPR029058 -
Trre5g01628 330 PRINTS Carboxypeptidase C serine protease (S10) family signature 70 82 IPR001563 GO:0004185|GO:0006508
Trre5g01628 330 PRINTS Carboxypeptidase C serine protease (S10) family signature 83 93 IPR001563 GO:0004185|GO:0006508
Trre5g01628 330 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 143 IPR001563 GO:0004185|GO:0006508
Trre5g01628 330 Pfam Serine carboxypeptidase 4 329 IPR001563 GO:0004185|GO:0006508
Trre5g01628 330 SUPERFAMILY alpha/beta-Hydrolases 4 329 IPR029058 -
Trre5g01628 330 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 3 319 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01628 Trre-Chr5 11817314 11821670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01628 272 329 Calmodulin-binding Proteins AT2G22960 36.207 7.94e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01628 K16296 - gmx:100791997 380.948