Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01615 ATGGCGACAAGGAATCGCACTTTGCTTTTTCGAAAATACAGAGATGCATTGAAGAGTGTTCGTGCTCCGTCAGCCTCTTCTCCATCGTCTAAATCTTCCGCCATTGAATTGGTCAGCACCTCGCTTCTCAATCAAAATCGCTCTTATGCTCCTCTTAGTACCGAAGATCCTGGAAATTCAAGTAAGGGTATAAATCCAATTACTGTGGGGCTACCTCCTGCGTGGGTGGATGTATCTGAAGAAATATCAGCGAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGTCCAAGGCTCATGCAAGGGCCTTAATGCCATCGTTTGCAGATGGTAAGGATGACCAACATGCTATTGAGTCTCTGACACATGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCGGAGACTTGCTGCTACAGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCCACTGACCTTCAGAGCCTCTCTGTAGAGCTTCGTAAAAAACAATCAACTTATTTGAAGCGCCTCAGACTGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATCAACATGAATGGAAGTAAATCTAGATATGAAGACGATGACTTGGACAATATGATATTTAACGAACATCAGATGGCCAAGCTAAAAAAAAGTGAAGCTTTCACAGTTGAAAGAGAAAAAGAGATACAACAGGTTGTAGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTGCTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGATTACAACATTCAGAATGTGGCAACCACAGTTGAGGATGGCCTCAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCGTCAGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTAGTAATTAAGGAAATTATTTTGTGA 966 0.4275 MATRNRTLLFRKYRDALKSVRAPSASSPSSKSSAIELVSTSLLNQNRSYAPLSTEDPGNSSKGINPITVGLPPAWVDVSEEISANVQRARTKMAELSKAHARALMPSFADGKDDQHAIESLTHEITDLIKRSEKRLRRLAATGPSEDSNVRKNVQRSLATDLQSLSVELRKKQSTYLKRLRLQKEGQDGVDLEINMNGSKSRYEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCASVLLIMCFVMLVLLVIKEIIL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01615 321 Coils Coil 79 99 - -
Trre5g01615 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Trre5g01615 321 FunFam Syntaxin-43 72 279 - -
Trre5g01615 321 ProSitePatterns Syntaxin / epimorphin family signature. 231 270 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre5g01615 321 CDD SNARE_syntaxin16 230 286 - -
Trre5g01615 321 SMART tSNARE_6 220 287 IPR000727 -
Trre5g01615 321 Gene3D - 72 279 - -
Trre5g01615 321 SMART SynN_4 66 181 IPR006011 GO:0016020
Trre5g01615 321 SUPERFAMILY t-snare proteins 71 280 IPR010989 GO:0016020|GO:0016192
Trre5g01615 321 PANTHER SYNTAXIN 78 306 IPR045242 -
Trre5g01615 321 Pfam SNARE domain 261 313 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01615 Trre-Chr5 11750890 11755045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01615 1 310 SNARE and Associated Proteins AT3G05710 75.000 8.28e-180 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01615 K08489 - gmx:100796741 539.65