Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01611 ATGGGAAATTGTTGCTCCCAAGGCGGAGATCCCCCGGCCGACAACACGGTCGTTGCAGCAGACAAGGGAGAAAACAATCAACAAGGAAACAACAATAACGATAATGAGCCATCGACAAACCCTATAACCACACCACCACCAACATCAAAACCACCGGCATCAACAGCCGCACCTGCTCCATCAAAACCCGCGAAACCGGCTGCCATGGGGCCCGTCTTACAACGACCAATGGAAGACGTAAGAGCGACATATACCATAGGAAAAGAGCTAGGGAGAGGACAATTTGGTGTAACACATTTATGCACAAATAAGGTAACAAGAGAACAATTTGCATGCAAAACAATTGCCAAGAGAAAACTAGTGAATAAAGAAGATATAGAAGATGTTAGGAGGGAGGTGCAAATAATGCATCACCTAACGGGCCAAGCAAACATTGTGGAACTAAAAGGTGCATATGAAGATAAACAATCTGTTCATTTGGTCATGGAATTGTGTGGCGGAGGAGAACTATTTGATCGAATTATTGCGAAGGGACTTTATACTGAACGTGCCGCGGCTGCATTGTTGAGGACGATTGTACAAATTATTCATACTTTGCATTCAATGGGTGTTATTCATAGAGATCTTAAGCCTGAAAATTTCCTCTTGTTAAATAAGGATGAAAATGCACCCCTTAAGGTCACCGATTTTGGTCTTTCCGTCTTTTTCAAAGAAGGAGAAATGTTCAAAGACATTGTTGGTAGTGCATATTACATAGCACCAGAGGTGTTGAAGAGGAGATATGGCCAAGAAGTTGACATATGGAGTATTGGTGTCATGCTATACATTCTTCTTTCTGGTGTCCCTCCTTTTTGGGCAGAATCTGAACATGGTATATTCAATGCCATCTTAAGAGGTCACATTGACTTTACAAGCGATCCATGGCCTTCAATTTCACCATCAGCAAAAGATCTTGTTAGGAAAATGTTAAATTCAGATCCCAAACAAAGACTTACAGCATATGAAGTTTTGAATCACCCTTGGATCAAGGAGGATGGAGAAGCACCAGATGTACCTATTGACAATGCTGTACTTAATAGGCTCAAGCAATTCAAAGCACTTAACCAATTTAAGAAAGTTGCTTTAAAGGTAATTGCTGGATGTTTATCAGAAGAAGAAATCATGGGATTGAAGGAAATGTTCAAGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAACTTAAACAAGGCCTTGCAAAGCAAGGAACCAAGCTTTCAGAACAAGAAGTTAAGCAACTAATGGAAGCAGCTGATGCTGATGGAAATGGAATAATAGATTACGACGAGTTCATCACAGCAACAATGCACATGAACAGAATGAATAGAGAAGAACATCTTTACACTGCCTTCCAATTCTTTGATAAAGATAACAGCGGGTTCATTACCACAGAAGAACTAGATCAAGCTCTGCGTGAATACAACATGCATGATGGCAGAGACATCAAAGATATTCTTCAAGAAGTTGATGGAGATAATGATGGACGTATTAACTATGATGAATTTGCAGCAATGATGAGAAAAGGAAATCCAGAAGCTCATACTAAGAAGAGACGTGATTCATTTGTCTCACAATAG 1623 0.4036 MGNCCSQGGDPPADNTVVAADKGENNQQGNNNNDNEPSTNPITTPPPTSKPPASTAAPAPSKPAKPAAMGPVLQRPMEDVRATYTIGKELGRGQFGVTHLCTNKVTREQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQANIVELKGAYEDKQSVHLVMELCGGGELFDRIIAKGLYTERAAAALLRTIVQIIHTLHSMGVIHRDLKPENFLLLNKDENAPLKVTDFGLSVFFKEGEMFKDIVGSAYYIAPEVLKRRYGQEVDIWSIGVMLYILLSGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPSAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDVPIDNAVLNRLKQFKALNQFKKVALKVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGIIDYDEFITATMHMNRMNREEHLYTAFQFFDKDNSGFITTEELDQALREYNMHDGRDIKDILQEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFVSQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01611 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 79 517 - -
Trre5g01611 540 Pfam EF-hand domain pair 459 522 IPR002048 GO:0005509
Trre5g01611 540 Pfam EF-hand domain pair 390 450 IPR002048 GO:0005509
Trre5g01611 540 SUPERFAMILY EF-hand 382 522 IPR011992 -
Trre5g01611 540 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Trre5g01611 540 FunFam Calcium-dependent protein kinase 1 350 525 - -
Trre5g01611 540 Gene3D - 353 528 - -
Trre5g01611 540 MobiDBLite consensus disorder prediction 40 59 - -
Trre5g01611 540 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Trre5g01611 540 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Trre5g01611 540 MobiDBLite consensus disorder prediction 1 76 - -
Trre5g01611 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Trre5g01611 540 Gene3D Transferase(Phosphotransferase) domain 1 170 352 - -
Trre5g01611 540 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Trre5g01611 540 SUPERFAMILY Protein kinase-like (PK-like) 71 365 IPR011009 -
Trre5g01611 540 ProSiteProfiles Protein kinase domain profile. 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01611 540 Gene3D Phosphorylase Kinase; domain 1 85 169 - -
Trre5g01611 540 FunFam Calcium-dependent protein kinase 1 86 169 - -
Trre5g01611 540 SMART serkin_6 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01611 540 ProSiteProfiles EF-hand calcium-binding domain profile. 496 527 IPR002048 GO:0005509
Trre5g01611 540 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Trre5g01611 540 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Trre5g01611 540 Pfam Protein kinase domain 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01611 540 FunFam calcium-dependent protein kinase 1 170 349 - -
Trre5g01611 540 CDD STKc_CAMK 84 341 - -
Trre5g01611 540 ProSitePatterns Protein kinases ATP-binding region signature. 90 117 IPR017441 GO:0005524
Trre5g01611 540 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Trre5g01611 540 SMART efh_1 461 489 IPR002048 GO:0005509
Trre5g01611 540 SMART efh_1 496 524 IPR002048 GO:0005509
Trre5g01611 540 SMART efh_1 389 417 IPR002048 GO:0005509
Trre5g01611 540 SMART efh_1 425 453 IPR002048 GO:0005509
Trre5g01611 540 MobiDBLite consensus disorder prediction 20 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01611 Trre-Chr5 11736749 11740992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01611 1 535 EF-hand Containing Proteins AT5G12180 78.318 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre5g01611 Pkinase 2.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01611 K13412 - gmx:100781355 927.932