Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01610 ATGGGTGTTGCAAGAGGTTTGACATATTTACACGAGGAGTCATGGCTCCGGATTGTGCATCGTGATGTGAAAGCTAATAATATTCTACTTGACTCTAAGCTTGTCCCAAAAATATCTGATTTTGGATTGGCCAAATTATATGATGATACAAAAACGCATATAAGCACTCGTGTTGCTGGGACAATTGGATATCTTGCACCGGAGTATGTCATGCGTGGACACCTCACAGAGAAAGCGGATGTTTTTTCCTTTGGCGTTGTGGCTCTTGAGTTAGTTAGTGGGAGGCCAAATTCCGATTCAAGTTTGGAAGGAGAAAAGGTGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAAGAACTGTATAAATGATCTGATAGATTCTAGACTATCAGAATTTAACACGGAAGAAGTCCAACGCCTTGTGAAAATAGGACTTTTGTGCACTCAAACATCACCGAACTTACGGTCATCGATGTCACGTGTAGTGGCAATGCTTTCAGGAGATATGAAAGTGAGTGTTGTAACAGCAAGGCCCGAATACTTGACTGACTGGAAATTTGACGATGTTAGCAGCATCATGACTGATATTTCATCAAAGGGGTTGGATTCAAGTTATTACAATTCATCATCAAGTACCAACATAGTTGGTGGTGCAGATAATCTCCATTCACCAAATGATCCATCTAAATCCATCCTTCATTAG 705 0.4071 MGVARGLTYLHEESWLRIVHRDVKANNILLDSKLVPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYVMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKVYLLEWAWQLHEKNCINDLIDSRLSEFNTEEVQRLVKIGLLCTQTSPNLRSSMSRVVAMLSGDMKVSVVTARPEYLTDWKFDDVSSIMTDISSKGLDSSYYNSSSSTNIVGGADNLHSPNDPSKSILH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01610 234 Pfam Protein kinase domain 3 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01610 234 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01610 234 Gene3D Transferase(Phosphotransferase) domain 1 1 183 - -
Trre5g01610 234 SMART serkin_6 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01610 234 SUPERFAMILY Protein kinase-like (PK-like) 2 194 IPR011009 -
Trre5g01610 234 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 178 - -
Trre5g01610 234 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 205 - -
Trre5g01610 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 18 30 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01610 Trre-Chr5 11732119 11733086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01610 1 192 Receptor kinase-like Gene Family AT1G56120 73.438 1.25e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g01610 Pkinase 5.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01610 - - mtr:25502389 380.948