Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01604 ATGTGTTCAACATTTTCCATGGATTCATTGCTAGTTGGAACTTTTCCTGAGTTTTACTCATATTCATTCACCACCACTAGTTCCTTAAATAGGGACAGTGAAACCAAAGAATATCCGATTGAAAGTTCTCATGCACCGGAGCATTCTTCTGTCTCTAGTGAACCATTGCTCACTCTAAAAGAATATACTTTCAGGATGAATGTCTCGAAAGTGAGTCGGAATACCTATCTTTTTCAAGGGATCTCATTTCATATTTTAGTGTTGGAAAGAAATGTAAGCTCAATGGTCAGAACTTACATCCGCGCTACCAGGTTAAAGGAAACTTATCATCGCAAACATAGAGTTTGTGACATTCATTCCAGATCTCCTAAGGTGATTGTAGCTGGTTTGGAAAGTCGATTTTGCCAGCAATGTAGGAGGTTCCATGATCTGTTTGAATTCAATGAAAAAAAGAGAAGCTGCAGACGACGACAACGTCTTTCACATCGTCCTCCTGATGATGTCCAGTCAAGTCAATCAGCTTTGACTTCCTCACGACGTATAAGTATTATGTATGAAAAGTGTGTAGAAATACCAGTTCTCAACAAATGTTGA 594 0.3872 MCSTFSMDSLLVGTFPEFYSYSFTTTSSLNRDSETKEYPIESSHAPEHSSVSSEPLLTLKEYTFRMNVSKVSRNTYLFQGISFHILVLERNVSSMVRTYIRATRLKETYHRKHRVCDIHSRSPKVIVAGLESRFCQQCRRFHDLFEFNEKKRSCRRRQRLSHRPPDDVQSSQSALTSSRRISIMYEKCVEIPVLNKC 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01604 197 Pfam SBP domain 106 160 IPR004333 GO:0003677
Trre5g01604 197 MobiDBLite consensus disorder prediction 156 175 - -
Trre5g01604 197 Gene3D - 90 155 IPR036893 GO:0003677|GO:0005634
Trre5g01604 197 SUPERFAMILY SBT domain 107 159 IPR036893 GO:0003677|GO:0005634
Trre5g01604 197 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 106 157 IPR044817 GO:0003677
Trre5g01604 197 ProSiteProfiles Zinc finger SBP-type profile. 90 168 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01604 Trre-Chr5 11697955 11699264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01604 109 162 SBP-box Gene Family AT1G27370 72.222 2.70e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre5g01604 SBP 6.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01604 - - lja:Lj0g3v0057709.3 104.375