Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01595 ATGGTATCTTGCTTGAAGCCACAAAGTAGCAATGAAGATGATTCTGTCATACTCTTTTCAACTTCTAATTCTTCCATTAGTCCTTCTTCCTCTTCTTTCCACCATTCACCACCACATACTTCATACAAACTTTCCATCAAAAACCTCACCTATACTTTGCACCCATTTTCATTCTCATTTTCTCATTTAACTCAAAAACCACATCCTATAAATATACTCAAATCTGTCTCTTTTGTTGCTCGAACGTCCGAGATTGTTGCGGTTGTCGGTCCTAGTGGCACCGGAAAATCAACCCTTCTTAAAATAATCGCGGGGCGAGTCAAAGATAAAGACTTCAATCCAAAAACTATATCAATCAATGATCAACCTATGAGTACTCCATCACATTTAAGAAAAATTTGTGGCTTTGTTTCACAAGAAGATAACTTGCTTCCACTTCTAACAGTGAAAGAAACATTGCTTTTTAGTGCAAAGTTTAGATTAAAAGAAATGACACCAAAAGAAAGAGAATTGAGAGTAGAAAATTTAATGCAAGAGTTAGGACTTTTTCATGTTCAAAATAGTTTTGTTGGTGATGAAGAAAATAGAGGAGTTTCTGGTGGTGAAAGAAAAAGAGTATCCATTGGTGTTGATATGATTCATAATCCACCAATTTTAGTCTTAGATGAACCAACTTCAGGACTTGATAGTACTTCAGCTCTTCATGTAATTGAGCTTTTGTCATCAATGGTTAAATCAAAACAAAGGATAGTGATCCTTTCAATTCATCAACCTAGCTATAGAATATTGCAATATATTTCTAAGTTCTTAATCCTTTCTCATGGTTCAGTTGTTCACAATGGAAGTTTGGAATCATTAGAGAAAACCATATCCAATTTGGGATATCACATTCCATTACAACTTAATGCTCTTGAATTTTCAATGGAAATTATTCAATGTTTAGAAGATTCTAGTACTAGTAGTTCGGTCGTTGTTGCAGACGAAAATGAAACTTGTTTTCCAAGTTACATGTGGCAAGAAGAAGAAAAAGGTTATGAAAAGGATCAAAGTTTTGGAAATGATTGTTATGTAAACATGATGGAGATACTATTTTTATGTTCAAGATTTTGGAAGATTATTTATAGAACAAAACAACTTTTCTTAGCAAGAACAATGCAAGCATTAGTTGGTGGATTTGGTTTAGCAAGTGTTTATATAAAAGTAAGAAAAGATGAAGATGGAATTGCAGAAAGATTAGGTCTTTTTGCATTTAGTTTAAGTTTTCTTTTATCTTCAACAGTTGAAGCACTTCCAATATATCTTCAAGAAAGAACTGTTCTTATGAAAGAAGCATCAAGAGGAGCTTATAGAATCTCTTCATATATGATAGCCAACACTTTTGTTTTTCTTCCTTTTTTGTTTGTTGTTTCAACACTTTTTGCAGTTCCTGTTTATTGGATTGTAGGACTCAATCCTTCAATCACTTCCTTCATTTTTTTCACTTTTGTGGTTTGGCTTATTGTGCTCATGGCAAGTTCTTTAGTACTCTTTTTGAGTTCTGTGTCTCCTGATTTCATTTCAGGAAATTCTTTAATCTGCACTGTTCTTGGAGCTTTCTTTTTGTTCTCTGGTTACTTTATACCAAAAGAGAGTATTCCAAAATATTGGCTTTTGATGTATTATGTGTCACTTTATAGGTACCCTTTGGATGCATTACTCACAAATGAGTATTGGAATGTTGGAAATGAGTGTTTCTCAAAAGGGTCTTCATCAAAGTGTTTGATTACTGGATTTGATGTGTTGAAGAGTAGAGGGATTGATAAGGATAATAGGTGGATGAATGTGGGAATAATGGTTGGATTCTTTGTGTTCTATCGTTTGCTTTGTTGGGTTATACTTGCTAGAAAAGCCTCCAAGACAACAATATAG 1908 0.336 MVSCLKPQSSNEDDSVILFSTSNSSISPSSSSFHHSPPHTSYKLSIKNLTYTLHPFSFSFSHLTQKPHPINILKSVSFVARTSEIVAVVGPSGTGKSTLLKIIAGRVKDKDFNPKTISINDQPMSTPSHLRKICGFVSQEDNLLPLLTVKETLLFSAKFRLKEMTPKERELRVENLMQELGLFHVQNSFVGDEENRGVSGGERKRVSIGVDMIHNPPILVLDEPTSGLDSTSALHVIELLSSMVKSKQRIVILSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEKTISNLGYHIPLQLNALEFSMEIIQCLEDSSTSSSVVVADENETCFPSYMWQEEEKGYEKDQSFGNDCYVNMMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLASVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVLMKEASRGAYRISSYMIANTFVFLPFLFVVSTLFAVPVYWIVGLNPSITSFIFFTFVVWLIVLMASSLVLFLSSVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLLMYYVSLYRYPLDALLTNEYWNVGNECFSKGSSSKCLITGFDVLKSRGIDKDNRWMNVGIMVGFFVFYRLLCWVILARKASKTTI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01595 635 SMART AAA_5 82 284 IPR003593 GO:0016887
Trre5g01595 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 292 IPR027417 -
Trre5g01595 635 FunFam ABC transporter G family member 23 64 297 - -
Trre5g01595 635 Gene3D - 58 309 IPR027417 -
Trre5g01595 635 Pfam ABC-2 type transporter 362 570 IPR013525 GO:0016020|GO:0140359
Trre5g01595 635 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524|GO:0016887
Trre5g01595 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 620 - -
Trre5g01595 635 Pfam ABC-2 type transporter 256 324 IPR043926 GO:0140359
Trre5g01595 635 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 299 IPR003439 GO:0005524
Trre5g01595 635 Pfam ABC transporter 73 226 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01595 Trre-Chr5 11640629 11642536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01595 70 328 Calmodulin-binding Proteins AT2G36910 27.437 3.07e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01595 K05681 - gmx:100783883 968.763