Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01590 ATGGCTATTCTTCCTTTCATACTCGTTATTACTAATCATCTACTACTACTAGTACTATTCTTCTCTAAAATTTCCTTTGCAACTGATACAATTACCCAATTACAAACACTTTCCGATGGAAACACCTTGGTTTCTAAGAAGGGAGTGTTTGAATTGGGTTTCTTCAATCTTGGAGATTCAACAAACCGCTATGTTGGAATTTGGTACAAAAATATTCCAGTTAGAAGAATAGTTTGGGTTGCTAATCGTGACAATCCAAGCAAAGACAATTCTAGCAAATTGATCATAAGTCGTGATGGAAACCTTGTGCTTGTTAATCAGAATCAATCTCTTATTTGGTCAACAAACATAACAACAAAGATTTCGATTTCAAGTCCAACTGTGCAACTCTTGGACAACGGAAATTTATTACTAAAAATTGAGAAGCAGAACACCGAAGAAAATTTTCTATGGCAGAGTTTTGATTATCCATGTGACACAATATTGGCAGGAATGAAGATTGGATGGGATAAAAAAAGTAGTCTTGCTAGGCGTCTCACGGCATGGAAAAATTGGAATGACCCGTCTTCAGGTGAGCTTACTTCAATTATGGTACTAACTCCTAATCCTGAAGTATTTTTTTTGCAAGGCTCAATAAAACACTATAGGACAGGACCATGGACTGGTCGCCGATCCAGTGAAATATTTGGATTGAGAGAAAATCCACTTTATAATTATGAATTTCTTAGTAATGACGATGAAATATATTATATGTTTACACTAAAAAATAGCTCCGTGGTTTCTATAATTGTTATGAACGAAACTCTTTCTGTTCGTCAACGCCTTGTTTGGATTCAAGAATCCAAAACATGGAATACTTACCAAACCTTACCACAAGATAATTGTGATATATACAATGTTTGTGGAGCAAATGGACTATGTGCGCGTGATTCATCGTCTATGTGTCAATGTTTAGAGGGATTTAAGCCAAAATCACCACAAGAGTGGAATGCAACAGTGTGGACACAAGGATGTGTGCATATTGGTAATTGGAGTTGTGAGCTCAAAAAGAATCATGGATCCAAAAGAGTTGTCGGAATGAAATTGCCCGATACTGCAAATTCTTGGATTGATGAGAAAATGACACTAGAAAATTGCAAGGCTAAATGCTTGAAAAATTGTTCATGCAGTGCTTACTCAAGTTTAGACGCAAGTGGAGTAGGTAATGGTTGTTCCATCTGGTTTGGTGATCTCATTGATCTTAGAGTTTCATCTACTGGACAAGACCTATATATTCGAATGGAAGCTTCAAATATCGGTGATAAAAATGAGCACACCAAATTGGTAGTATTGGTGGTATCAATAACAGTTCCAGCAATCCTGGTGATGGCAATCACATACATTTATATAACAAAGGAAAATTATAAAAAGAAAACCACCAAGTTAGGCGAGAAAGGCAAAGACAGAAATCAAGAATTTGAGCTTCCTATCTTTGATCGAGCTACAATATTCAAGGCAACAAAAAACTTCTCTTTCGATAACAAGCTCGGCGAAGGTGGTTTTGGATCAGTATACAAGGGTAGATTGCTTAATGGACAAGAAATTGCTGTCAAAAGGCTTTTAATGAGTTCAGGTCAAGGATTAAAGGAGTTTAAAAATGAAGTTACGTTATGTGCTAAACTTCAACATCGAAATTTTGTTAAGATTGTTGGTTTTTGTATTGAAGGAAAGGAGAAAATGTTGATCTATGAATACATGTCCAATAAAAGTCTTGATTCATTTCTTTATGATCCATTTCAAAAAATTATTAGTGGAAAGAAAAATAGAGCACATAGCTACCAAGAACATGATCAAAATCTCATTGGATATGCATGGAGAATGTGGAGAGATGGCACTCCTCTTAAATTGATTGATGAATATTTAAAGGAATCATGTATTGAATCTGAAGCTTTACATTGCATTCAAATTGGTCTATTATGCCTACAACATCATCCTGAAAATAGACCTAGCATGGCATCTGTTATTGTGATGTTAAGTAGCGAAAGTGTTTTATCTTGCAAACCAAAGGAACCCAGTTTCTTAATTAAAAAGTTAACAGCTGAAGGAGAGTCTTCCTCTATGCAACAATAG 2109 0.3542 MAILPFILVITNHLLLLVLFFSKISFATDTITQLQTLSDGNTLVSKKGVFELGFFNLGDSTNRYVGIWYKNIPVRRIVWVANRDNPSKDNSSKLIISRDGNLVLVNQNQSLIWSTNITTKISISSPTVQLLDNGNLLLKIEKQNTEENFLWQSFDYPCDTILAGMKIGWDKKSSLARRLTAWKNWNDPSSGELTSIMVLTPNPEVFFLQGSIKHYRTGPWTGRRSSEIFGLRENPLYNYEFLSNDDEIYYMFTLKNSSVVSIIVMNETLSVRQRLVWIQESKTWNTYQTLPQDNCDIYNVCGANGLCARDSSSMCQCLEGFKPKSPQEWNATVWTQGCVHIGNWSCELKKNHGSKRVVGMKLPDTANSWIDEKMTLENCKAKCLKNCSCSAYSSLDASGVGNGCSIWFGDLIDLRVSSTGQDLYIRMEASNIGDKNEHTKLVVLVVSITVPAILVMAITYIYITKENYKKKTTKLGEKGKDRNQEFELPIFDRATIFKATKNFSFDNKLGEGGFGSVYKGRLLNGQEIAVKRLLMSSGQGLKEFKNEVTLCAKLQHRNFVKIVGFCIEGKEKMLIYEYMSNKSLDSFLYDPFQKIISGKKNRAHSYQEHDQNLIGYAWRMWRDGTPLKLIDEYLKESCIESEALHCIQIGLLCLQHHPENRPSMASVIVMLSSESVLSCKPKEPSFLIKKLTAEGESSSMQQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01590 702 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Trre5g01590 702 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Trre5g01590 702 PIRSF SRK 592 702 IPR024171 GO:0004674
Trre5g01590 702 PIRSF SRK 1 595 IPR024171 GO:0004674
Trre5g01590 702 SMART ntp_6 349 427 IPR003609 -
Trre5g01590 702 SUPERFAMILY Protein kinase-like (PK-like) 495 677 IPR011009 -
Trre5g01590 702 ProSiteProfiles Protein kinase domain profile. 503 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01590 702 ProSiteProfiles PAN/Apple domain profile. 346 428 IPR003609 -
Trre5g01590 702 Pfam D-mannose binding lectin 77 183 IPR001480 -
Trre5g01590 702 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 662 - -
Trre5g01590 702 Gene3D Transferase(Phosphotransferase) domain 1 592 685 - -
Trre5g01590 702 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Trre5g01590 702 CDD PAN_AP_plant 345 426 - -
Trre5g01590 702 SMART blect_4 34 157 IPR001480 -
Trre5g01590 702 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 578 - -
Trre5g01590 702 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 188 IPR036426 -
Trre5g01590 702 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Trre5g01590 702 Gene3D - 22 154 IPR036426 -
Trre5g01590 702 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 154 - -
Trre5g01590 702 Pfam PAN-like domain 353 414 IPR003609 -
Trre5g01590 702 Pfam Protein tyrosine and serine/threonine kinase 504 591 IPR001245 GO:0004672|GO:0006468
Trre5g01590 702 CDD B_lectin 35 157 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01590 Trre-Chr5 11613107 11616053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01590 594 698 Receptor kinase-like Gene Family AT4G23190 38.938 2.06e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g01590 PK_Tyr_Ser-Thr 2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01590 - - tpra:123915292 875.93