Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01580 ATGTCTGAACCTAACATGCAAATGACACTATCAAGTTCTTCAAGTGACTCATCTGACCATGAAAATGAAACACCTTTCACCACCACAACAAACCAACCACAAACCACCATGGTCGGTGGTTCTTCATCTTACCAACAAACACCAACCTCAGTCAATTCACCAAACCAACAACCCTTTTCACCACCATACAAAAAGCCACGTGGCAGACCACCAGGTTCAAAAAACAAACCAAAACCACCATTAGTAATAACACAAGACAATGAACAAGCTATGAAACCAGTAGTTATTGAAGTAGCTTCTGGTACTGATGTTCTTGAAGCTATTATACAATTTGCTGTTCGTTCTACTTCATGTCTTACTGTTCTTAGTGGTTCTGGTACTATTGCTGTTGCTACTCTTCATTACCCTCTTTGTCGTTCACCTGCTTTTACTCTTCATGGTCCATTTTCATTGATGAATTTGACTGGTACTTTTTTGTATCCTCCACCACCACCACCACCACCTCCATCTGTTTCTCTTTCTCTTCCTATTGGTCCTTCAACAAATATTAATCCGGTCGAGTCGATGCCGGGGGCTTTGAGTTTTGGTATTACTCTTGCTGGTTTACAAGGACAAGTTTTTGGTGGGATTATTGGTGGAAAAGTTATTGCTGGTGGTGATGGTGTTAAGGTTACTGTTTCTTTGTTTAAGAATCCTGAATTTCATAGGGCTGGTGGTGTTATTCTTGGAGATGATGATGATGATGATGATGCTGATGATGATGGTGGTGGTGGTGGTGGTGATAACAATGGTAATGGAAATGGTGGTGGTGATCAAGGTGCTAGTGGTAGTGGTGGTGGTGGAAGTGATCAGAATGTGTCTGGTTTCGATGTGCATAATCCAATGCCTTCGAATCTAGCACATTCTGATCAAAACTTCGTGCCGTGGAACCACCCTTGA 939 0.4185 MSEPNMQMTLSSSSSDSSDHENETPFTTTTNQPQTTMVGGSSSYQQTPTSVNSPNQQPFSPPYKKPRGRPPGSKNKPKPPLVITQDNEQAMKPVVIEVASGTDVLEAIIQFAVRSTSCLTVLSGSGTIAVATLHYPLCRSPAFTLHGPFSLMNLTGTFLYPPPPPPPPPSVSLSLPIGPSTNINPVESMPGALSFGITLAGLQGQVFGGIIGGKVIAGGDGVKVTVSLFKNPEFHRAGGVILGDDDDDDDADDDGGGGGGDNNGNGNGGGDQGASGSGGGGSDQNVSGFDVHNPMPSNLAHSDQNFVPWNHP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01580 312 MobiDBLite consensus disorder prediction 1 58 - -
Trre5g01580 312 ProSiteProfiles PPC domain profile profile. 88 232 IPR005175 -
Trre5g01580 312 MobiDBLite consensus disorder prediction 1 84 - -
Trre5g01580 312 Gene3D - 91 243 - -
Trre5g01580 312 MobiDBLite consensus disorder prediction 237 312 - -
Trre5g01580 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 309 IPR014476 GO:0003680
Trre5g01580 312 MobiDBLite consensus disorder prediction 59 77 - -
Trre5g01580 312 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 236 - -
Trre5g01580 312 MobiDBLite consensus disorder prediction 265 312 - -
Trre5g01580 312 CDD DUF296 92 218 IPR005175 -
Trre5g01580 312 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 219 IPR005175 -
Trre5g01580 312 PIRSF ESCAROLA 2 180 IPR014476 GO:0003680
Trre5g01580 312 PIRSF ESCAROLA 172 310 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01580 Trre-Chr5 11501138 11502076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01580 64 292 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 38.819 6.92e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01580 - - tpra:123915288 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01580 5 11501138 11502076 Trre5g01580 5 11501138 11502076 ECH