Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01578 ATGGCTAGACGAAGGGTGAAACTTGCTTTCATTGTTAATGATGCTGCAAGAAAAGAGACATATAAAAAAAGGAGCAAGAATGTATTGAAAAAAGTTAATGAACTAAGCACCCTATGCGGAATAGAAGCATGTGCTATAGTCTATGGTCCGTATGAGCCAGAACCTGAGATTTGGCCACCATCCCCTTCAGAAGTCCAAAAGGTGGTATCGAAATTCAGAGCAAAACCTGAATTTGAGCAAAGTAAAAAAAAATTGAGTCAAGATGATTACTTGAAACAGAGAGTTGTGAAGGCTGAAGACCAACTGATGAGGTTGAGGAAAGAAAATAGACAAAATGAGATGCAATTGTTTATGTATGAATATTTTAAAAAAGGTCAAATTGATCTCAACAATATTTCATTGAATGATTTGAATGATCTTTCTTGGTTTATTGACCATAATTTGAAGGGCATTGGTAGAAGACTGGAAGTAGGGTATACTGATAATGGTCAAGGTCAAATTATGACTGCTCCAAGCCAACTTCAACGTCTCCAAATGACACCACCACCTCCATCAGCAGCAGCAACATCTAGCAATGGTGAAATGGCAATGACGATGAATCATGGCCATGTTGGGATGATTAATGATGACATCATGCAAATGGGGTCGTTTATGGATTTGTTGAATGAGAATGGGGATGAGACAATTCCATCTGGTCAGCGTCATGATGCCAATCTTTAA 720 0.3819 MARRRVKLAFIVNDAARKETYKKRSKNVLKKVNELSTLCGIEACAIVYGPYEPEPEIWPPSPSEVQKVVSKFRAKPEFEQSKKKLSQDDYLKQRVVKAEDQLMRLRKENRQNEMQLFMYEYFKKGQIDLNNISLNDLNDLSWFIDHNLKGIGRRLEVGYTDNGQGQIMTAPSQLQRLQMTPPPPSAAATSSNGEMAMTMNHGHVGMINDDIMQMGSFMDLLNENGDETIPSGQRHDANL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01578 239 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g01578 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Trre5g01578 239 FunFam agamous-like MADS-box protein AGL80 13 98 - -
Trre5g01578 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre5g01578 239 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre5g01578 239 Coils Coil 88 115 - -
Trre5g01578 239 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Trre5g01578 239 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Trre5g01578 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01578 Trre-Chr5 11487482 11488201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01578 1 157 Type I MADS-box Gene Family AT5G48670 50.318 9.82e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g01578 SRF-TF 8.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01578 - - psat:127080453 198.749