Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01577 ATGTCTTTTTTACTCATCAACATCCAAGACGAACATCAACAACCTCTACCCAACCTATTTCACGATCTTTCTATCAAAGATCTGAGTGAAAATGGGAGCGAAAAAGAAGAGAATCACTCTGTGGGATTTGGAACTCACGGTGCAATTTGTGCCATTTGCTTAGATAAGATAGCACTGCAAGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTATTGTGTAACATGCATCCTTCGCTGGGCCACATACAGTCAGAAAGTTACTTGCCCTCAGTGCAAACTTCCATTTGAGTTCCTCACTGTTCATCGCACACTTGATGGAAGTATTCAGGACTACATGGTGGAAGAAAGCGTCTGCCTACTCCTTCGAGCAAAGTGGTTCCAGCCTTTACCGGTTGTTGAAGAGCGTGTGATTGATGAAGATATCTATTTTGAGGAAATAGAAGAAGATTACTATAATCAATACGAAGAAGCTGATGATGATCTAGATGACGAAGTTTACTATGGTGGTTCAACAAGTGTCCGGATTGGCAACCGTAGATGGGGAGACAACGGTTATGTAAGGGCTGGGCGTCAAGAAGCACGACCGGTCCATCGACCAAGTTTCCAGGATTCAGGAGCAAGCTCATCGCGCGAGCCAAAGAAGAAAGAGCAAGAGGAGTCAAAACGTATGACAGGGAGACGGGCGAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCCGCTGAAGCAAAACATCAGCAGCATTTGGCTAGGTTTGGTAGGAAATGA 771 0.4501 MSFLLINIQDEHQQPLPNLFHDLSIKDLSENGSEKEENHSVGFGTHGAICAICLDKIALQETALVKGCEHAYCVTCILRWATYSQKVTCPQCKLPFEFLTVHRTLDGSIQDYMVEESVCLLLRAKWFQPLPVVEERVIDEDIYFEEIEEDYYNQYEEADDDLDDEVYYGGSTSVRIGNRRWGDNGYVRAGRQEARPVHRPSFQDSGASSSREPKKKEQEESKRMTGRRAKRALKREAADKAAEAKHQQHLARFGRK 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01577 256 MobiDBLite consensus disorder prediction 209 249 - -
Trre5g01577 256 SUPERFAMILY RING/U-box 49 100 - -
Trre5g01577 256 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 256 - -
Trre5g01577 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 168 IPR013083 -
Trre5g01577 256 CDD RING-HC_Topors 50 96 - -
Trre5g01577 256 SMART ring_2 50 92 IPR001841 -
Trre5g01577 256 ProSiteProfiles Zinc finger RING-type profile. 50 93 IPR001841 -
Trre5g01577 256 Pfam Ring finger domain 50 93 IPR001841 -
Trre5g01577 256 ProSitePatterns Zinc finger RING-type signature. 68 77 IPR017907 -
Trre5g01577 256 MobiDBLite consensus disorder prediction 190 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01577 Trre-Chr5 11465545 11468103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01577 25 256 C3H Transcription Factor Family AT5G19430 56.735 2.28e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01577 - - lja:Lj0g3v0250279.1 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01577 5 11465545 11468103 Trre5g01577 5 11465545 11468103 ECH