Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01572 ATGAATAAAAATAACAAACGAAAGCTAAAAACACCGGTGCAGCTTATGGCCTTGGAAGATTTTTATAATGATCACAAATACCCCACAGAGGAAATGAAACTTGAACTCACTAATGAATTAGAGCTGACAGAAAAGCAAATCTCGGGATGGTTTTGTCACAGAAGGTTAAAAGATAAGAGATTGATGAAAGGTGAAGTATGTGCTAATGGACGGCAAGACCGTTCAAGTGGCGTTGTTCAGGATCGTGGCAGTGGACGGCAGGATTCATGTGGAAGTACTAAGCATGATGACTATAGGTATTCGGAACCCAAAGAGGTTGAGAGTCTTGGCGTCTATAATCATGAATTATCAGTTGCAGATATGAACTATGCACATAGAAACCATTATACAGAAAATGATAGTGAAACAGATAACACATCATCCGAGAGTAGCTCATCTTTGCAAAAACGATTGTTTCTTCAAGGACAAGATCCGTATGATATGGAGCCTTCAAGATATGTAACACCAAATGGATCTCTTCCACCCTTAAATCCCAAGGGATATAAACCATCAGGATATTTAAAAATGAAGGGAGAGATAGAGCATGCTGCTATAACCGCTGTTAAGAATCGGTTGGGAAGGAATTATCTGGAAGACGGTCCACTACTTAATATAGATTTTGATACGATTCCTCCGAGGGCATTTGTATTTCAAACTGCGAATCCAGTTAATGAACCATACCATGTTGCAAATCCGTCTCTTTCAAGTTCCCCTGAAGTCTCTGCTGCAAAAAGGCAACATAGTCTTAACTCTAAATATGATTCATATTTGAACAAATTAAGTTTCCAAGATTTACAAATGGAAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATACCGCCAGCGTAAAAAACAAAGAACAAATATTCAGGGTCGTGCAATTCGCACCAATCATTTGCATGGCAAGAACTTATCCCCGGATTTGTACGTAGACTCGACTGGGGAAGCACCTGCTTATGATAGCACTAGAAATCATAGAATAGGAACTAGACATGTAGTTGAGAGAATGAGTTCTGAATCTGCATCTAGTCCTAGTGATACCGAAGAGAATAACCCGGCGGTTAAGCAGACAAATCCAGTACTACATGATTACAGTAACAGCAATGTGAAAAATGTACAAATGATTGAATATGTAAAATCTAAACCTTCAAATTCAATACGTAATTCTCGAATTTCCGAGGATACTGGAGGAAGAGGGCTTTCTGAAAGAACGGTAAAGGAAGAAAAGTTTAATGGGGGTAGAAAGATTAAAAAACAATATCATGAGTCAGATGGAGTAAGAATGCCATCGAAGGAAACAATGAAGGTTGCAAAGCGAGCCAAAGTTGATTTACTTCATCAATATGATATTAAACAAGCACATGTTGCTGAGATTGAACCAAGGAAAACTCAGAGATCTGCTGTGGAGATGCCATCTAGCATTAGTGAGGATGATGAAACTGCAGAAACCAGTTCCTCACTGGATTGA 1521 0.3892 MNKNNKRKLKTPVQLMALEDFYNDHKYPTEEMKLELTNELELTEKQISGWFCHRRLKDKRLMKGEVCANGRQDRSSGVVQDRGSGRQDSCGSTKHDDYRYSEPKEVESLGVYNHELSVADMNYAHRNHYTENDSETDNTSSESSSSLQKRLFLQGQDPYDMEPSRYVTPNGSLPPLNPKGYKPSGYLKMKGEIEHAAITAVKNRLGRNYLEDGPLLNIDFDTIPPRAFVFQTANPVNEPYHVANPSLSSSPEVSAAKRQHSLNSKYDSYLNKLSFQDLQMEGDFGSLHDSDFQDKKYRQRKKQRTNIQGRAIRTNHLHGKNLSPDLYVDSTGEAPAYDSTRNHRIGTRHVVERMSSESASSPSDTEENNPAVKQTNPVLHDYSNSNVKNVQMIEYVKSKPSNSIRNSRISEDTGGRGLSERTVKEEKFNGGRKIKKQYHESDGVRMPSKETMKVAKRAKVDLLHQYDIKQAHVAEIEPRKTQRSAVEMPSSISEDDETAETSSSLD 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01572 506 MobiDBLite consensus disorder prediction 287 385 - -
Trre5g01572 506 SMART HOX_1 3 65 IPR001356 GO:0003677
Trre5g01572 506 MobiDBLite consensus disorder prediction 353 385 - -
Trre5g01572 506 ProSiteProfiles 'Homeobox' domain profile. 1 61 IPR001356 GO:0003677
Trre5g01572 506 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 506 - -
Trre5g01572 506 MobiDBLite consensus disorder prediction 73 87 - -
Trre5g01572 506 MobiDBLite consensus disorder prediction 129 148 - -
Trre5g01572 506 MobiDBLite consensus disorder prediction 474 506 - -
Trre5g01572 506 MobiDBLite consensus disorder prediction 484 506 - -
Trre5g01572 506 MobiDBLite consensus disorder prediction 70 106 - -
Trre5g01572 506 SUPERFAMILY Homeodomain-like 3 69 IPR009057 -
Trre5g01572 506 CDD homeodomain 6 60 IPR001356 GO:0003677
Trre5g01572 506 MobiDBLite consensus disorder prediction 88 104 - -
Trre5g01572 506 Pfam Homeodomain 5 60 IPR001356 GO:0003677
Trre5g01572 506 Gene3D - 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01572 Trre-Chr5 11422989 11426144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01572 6 244 Homeobox Transcription Factor Family AT4G03250 54.918 4.69e-66 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre5g01572 Homeodomain 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01572 - - mtr:25488906 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01572 5 11422989 11426144 Trre5g01572 5 11422989 11426144 ECH
Trre5g01572 5 11422989 11426144 Trre9g04769 9 54374201 54379425 PCT