Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01563 ATGGCTAGGAAAAAGATCAAGCTTGCCTACATAACCAACAATTCAAAGAGAAAGGCAACATTTGAGAAAAGAAAAAATGGTTTAATTAAGAAGATTGATGAAATAAGCACCCTTTGTGGAATTAAAGCCTGCGCTATAATTTTCAATCAAAATGTTCCTCAACCAGAGGTTTGGCCATCACAAAGGGAAGTTCAAAGTGTGTTGTGGAGGTTTAAGAGTTTGTCTGAAATTGAACAAAGTAAAAACATGCTGAATCAAGAGAGTTTCTTGAAGCAAAGGATCGAAAAGGGACAAGAAAAATTGAAAAAACAAATGAATGAAAACAGAATGAAGGAAATGACCTATCTCATGTTTCAATGTCTTAATGCTGCCCAAAGTATTGACAATGTTGGCATGAATGATGTCAAAGATCTTTCATGGGTGATTGATCAGAACTTGAAACAAATTGGAAGGCGTATCGATGAGACTCAAGCTGAAGTGGTGGTCGAAAATCATGCTAAAAATGTGATTGGAATGGAGCAGAGGATGGGGAACAATGTTGATGCAATGCAAAGTCAAGATTGGACATTGGACTTCAACAACAACAATTTTGGTAATGTGTTGCCATTTGAAAATGGTAATAACGTACCAAATGGTTTGTGGTCTAATTAA 651 0.3594 MARKKIKLAYITNNSKRKATFEKRKNGLIKKIDEISTLCGIKACAIIFNQNVPQPEVWPSQREVQSVLWRFKSLSEIEQSKNMLNQESFLKQRIEKGQEKLKKQMNENRMKEMTYLMFQCLNAAQSIDNVGMNDVKDLSWVIDQNLKQIGRRIDETQAEVVVENHAKNVIGMEQRMGNNVDAMQSQDWTLDFNNNNFGNVLPFENGNNVPNGLWSN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01563 216 Coils Coil 87 107 - -
Trre5g01563 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g01563 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g01563 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g01563 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g01563 216 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Trre5g01563 216 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Trre5g01563 216 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre5g01563 216 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g01563 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Trre5g01563 216 PANTHER MADS BOX PROTEIN 3 126 - -
Trre5g01563 216 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01563 Trre-Chr5 11351388 11352955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01563 1 154 Type I MADS-box Gene Family AT5G48670 52.597 9.36e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g01563 SRF-TF 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01563 - - tpra:123915093 224.172