Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01558 ATGATATTTCAATCTCAATCATGTGCTTTAATTGCAACAATAATATTTGTTCTTGCAACACAAATCATTCTAGGAGTAAATTCATTTCCAGAATCTGATAAGATAACAAGTTTACCTCAGCAGCCAAAAGTTAAATTCCAACAATATGCTGGTTACATTACAGTTGATGAAGTTCAGAAAAGAGCTTTGTTTTACTATTTTGTTGAAGCTGAAGTTGAACCTGCTTCTAAGCCAGTAGTGCTTTGGTTAAATGGAGGGCCTGGTTGTTCATCTGTTGGAGCTGGAGCATTTGTGGAGCATGGTCCATTCAAACCAACTGAAAATGGTCTTATTAAAAATAATTACAGTTGGAACAAAGTGGCAAATATGCTCTACTTGGAATCACCTGCTGGTGTTGGTTTTTCCTATTCTGCCAATAAATCATTCTATGGCTATGTCAATGATGAAATGACAGCAAGGGATAATCTTGTGTTTCTGCAACATTGGTTCACTAAATTCCAAGAGTACAAAAACAATGATTTCTTTATCACAGGAGAGAGTTATGCAGGTCATTATGTACCTCAACTTGCACAACTCATTGTTCAAACCAAAAGCAAATTCAATCTCAAAGGGATAGCAATAGGGAATCCTCTTCTCGAATTTAACACAGATTTCAACTCAAGAGCTGAGTTTTTATGGTCTCATGGACTGATATCAGATTCAACCTATGAATCTTTCACAAAAATATGCAACTATTCTCAAATTAGAAGAGAATATCAAAGTGGAACATTTAGTATTGTTTGTTCAAGAGTGAATAGGCTAGTATCAATGGAGATCGGTAGATATATTGATTCATATGATGTTACACTTGATGTCTGTCTACCAACAGAAAAACAACAGGCTTATAGACTGACTCAATTGCAAGAGGGAGAGAAGATAGATGTTTGTGAGGAAGATGAAACAATTACATACTTGAATAGGAAAGATGTGCAGTTAGCTCTCCATGCTAAGCTTGTAGGCATCCCTGCCTGGTCAACTTGTAGTGGAATTCTCAAATATGACATGCAAAATCTAGAGATTCCAACCATACCAATTCTTGGGAAACTTGTTAAATCAGGTGTAAGAGTTCTAGTATACAGTGGAGATCAAGATTCAGTGATACCTTTACTTGGGACAAGATCTTTAGTAAATGGATTAGCCAAGGACTTTAGGTTGAACACAACAGCTTCCTATAGAGCTTGGTTTAATGAAAGACAGGTAGCTGGATGGACTCAGATATATGGTGGTGGTATCTTATCATTTGCAACCATAAGAGGAGCATCTCATGAGGCACCATTTTCACAACCTGGGAGATCATTGGGTCTGCTAAAGTCATTTTTGGAAGGAAAGCCACTTCCAACTATTCTTTGA 1389 0.3679 MIFQSQSCALIATIIFVLATQIILGVNSFPESDKITSLPQQPKVKFQQYAGYITVDEVQKRALFYYFVEAEVEPASKPVVLWLNGGPGCSSVGAGAFVEHGPFKPTENGLIKNNYSWNKVANMLYLESPAGVGFSYSANKSFYGYVNDEMTARDNLVFLQHWFTKFQEYKNNDFFITGESYAGHYVPQLAQLIVQTKSKFNLKGIAIGNPLLEFNTDFNSRAEFLWSHGLISDSTYESFTKICNYSQIRREYQSGTFSIVCSRVNRLVSMEIGRYIDSYDVTLDVCLPTEKQQAYRLTQLQEGEKIDVCEEDETITYLNRKDVQLALHAKLVGIPAWSTCSGILKYDMQNLEIPTIPILGKLVKSGVRVLVYSGDQDSVIPLLGTRSLVNGLAKDFRLNTTASYRAWFNERQVAGWTQIYGGGILSFATIRGASHEAPFSQPGRSLGLLKSFLEGKPLPTIL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01558 462 SUPERFAMILY alpha/beta-Hydrolases 26 460 IPR029058 -
Trre5g01558 462 Gene3D - 355 455 - -
Trre5g01558 462 FunFam Carboxypeptidase 355 455 - -
Trre5g01558 462 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Trre5g01558 462 FunFam Carboxypeptidase 28 459 - -
Trre5g01558 462 Gene3D alpha/beta hydrolase 30 287 IPR029058 -
Trre5g01558 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Trre5g01558 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Trre5g01558 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Trre5g01558 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Trre5g01558 462 Pfam Serine carboxypeptidase 42 455 IPR001563 GO:0004185|GO:0006508
Trre5g01558 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 442 IPR001563 GO:0004185|GO:0006508
Trre5g01558 462 Gene3D - 309 344 - -
Trre5g01558 462 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01558 Trre-Chr5 11312672 11316518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01558 317 458 Calmodulin-binding Proteins AT2G22960 29.577 5.21e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01558 K16297 - gmx:100805028 758.444