Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01552 ATGGAAGGAATAGCAACTGGGTCACATGAAAGAAACGAACTTGTTCGTGTTAGAAATGGTTCAGCTTCTGGGTCTAAACCCTTGAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGCGATACTGTTGGATTAACAGCAACTGGCGATGTCTTCATTGCTTGCCACGAGTGTGCCTTCCCACTTTGTCATCCTTGTTTTGAATACGAGCGAAAAAACGGCCAATCATGTCTACAATGCAAGACTAAATACAAAAGTCACAAAGAAGGTCCTCAAGTGAAGGGAGACGATGATGATGATGATGAAGATGATCTGAGGAATGAGGTCAAGTATGGTCAAGGAAATAATTCGAAGACAGGATGGCAATGGGACGAAGATGCCGACCTCTCTTCATCTTCCGGACATGATTCTCAATTACAAAATCCTCATCTCACAAATGGACAGCTGATGTCTGGTGAGATTCCAGGTGCTACTTCTGATACTCAATCTGTGCAAACTACATCAGGTCCTTTGGGTCAATCCGAAAATGTTCACTCACGACCCTATGTTGATCCAAAGCAACCAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTGCCAGAGATGGGAGGTGAATCTGCCGGAACCTCAGCCCCTCGTAAAGGCGCCGGTTCTACTGCAGGTCCTGAACGTGCTCAGGGGGCCGGAGAGGGTCAAAAGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAGCAAACGACTAAAGAGGCTGCTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAGTGACTTGGAAACAAGAGTCAATGACTTAGAGAAGAAGAATTCAGAGCTTAAAGAAAAACTTTCCACTTTGCAAAATGAGAATCAAATGCTGAGACAAATATTGAAGAACACGACAGCAAGCAGAAGAGGGACCAACGGTGGTGCCAACAATGCTGAATGA 966 0.4493 MEGIATGSHERNELVRVRNGSASGSKPLKNLNGQICQICGDTVGLTATGDVFIACHECAFPLCHPCFEYERKNGQSCLQCKTKYKSHKEGPQVKGDDDDDDEDDLRNEVKYGQGNNSKTGWQWDEDADLSSSSGHDSQLQNPHLTNGQLMSGEIPGATSDTQSVQTTSGPLGQSENVHSRPYVDPKQPGLESDEEIRRVPEMGGESAGTSAPRKGAGSTAGPERAQGAGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLSDLETRVNDLEKKNSELKEKLSTLQNENQMLRQILKNTTASRRGTNGGANNAE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01552 321 SMART brlzneu 241 305 IPR004827 GO:0003700|GO:0006355
Trre5g01552 321 Gene3D Single helix bin 264 305 - -
Trre5g01552 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 108 IPR013083 -
Trre5g01552 321 SUPERFAMILY RING/U-box 22 103 - -
Trre5g01552 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 248 263 IPR004827 GO:0003700|GO:0006355
Trre5g01552 321 MobiDBLite consensus disorder prediction 228 268 - -
Trre5g01552 321 CDD mRING-HC-C4C4_CesA 34 83 - -
Trre5g01552 321 MobiDBLite consensus disorder prediction 87 268 - -
Trre5g01552 321 SUPERFAMILY Leucine zipper domain 245 303 IPR046347 GO:0003700|GO:0006355
Trre5g01552 321 Coils Coil 240 309 - -
Trre5g01552 321 CDD bZIP_HY5-like 246 297 - -
Trre5g01552 321 MobiDBLite consensus disorder prediction 110 175 - -
Trre5g01552 321 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 159 316 IPR044280 GO:0000981|GO:0045944
Trre5g01552 321 MobiDBLite consensus disorder prediction 1 16 - -
Trre5g01552 321 Pfam Zinc-binding RING-finger 26 101 IPR027934 -
Trre5g01552 321 Pfam bZIP transcription factor 242 303 IPR004827 GO:0003700|GO:0006355
Trre5g01552 321 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g01552 321 MobiDBLite consensus disorder prediction 187 201 - -
Trre5g01552 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 243 306 IPR004827 GO:0003700|GO:0006355
Trre5g01552 321 FunFam Transcription factor HY5 264 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01552 Trre-Chr5 11279674 11283155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01552 3 188 Glycosyltransferase AT4G32410 59.043 1.96e-59 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g01552 zf-UDP 3.2e-37 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01552 K10999 - aprc:113855639 528.094