Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01549 ATGTCCACTCTTTTTTTCTTCCTTCTACTTGTTTCCTTCACTAGTTCTTCTTCACTTCAACTTTCTTTGAAAAACCAAGCCTCAATCTTAGTTTCTATGAAACATGGTTTTGTATTTGACAAAGCTTCAAACTCTTGTTTGAATAGTTGGAACATTTCTAACTACATGTCACTTTGCACTTGGTATGGAATTCAATGTGACAAAAAAAACATGTCTATAGTTTCATTTGACATTTCAAAGTTAAACATTTCAGGTTCATTTTCATCTCATGTCACAAAACTTTACACACTTGTGAATGTTTCAATTCAAGAAAATAGCTTTTATGGTGAGTTTCCAGCTGAAATTCATAAGCTACAAAGTTTGAAATACCTTAACATATCAAATAATATGTTTAGTGGAAACTTGAGTTGGGAATTCAACAAATTGAAAGAGCTTGAAGTGTTGGATATTTACAACAATGGTTTCAATGGTTCACTTCCAAAGAATGTTACTCAAATGTTTAAGCTTAAGCATTTGAATTTTGGAGGGAATTATTTTAATGGAAAAATTCCTACAAGTTATGGAGAAATGAAAGAGCTTAATTTTTTGTCTCTTGCTGGAAATGATTTGAGTGGTGACATACCTAGTGAGCTTGGAAATTTGACTAGTTTGGAATATCTTTATTTAGGTTATTTCAATCAATTTGATGGTGGAATTCCAAATGAGTTTGGTAAGTTGATTAATTTGGTTCATTTAGATTTAGCAAGTTGTTTCTTGAAAGGTTCAATTCCAAATGAGTTAGGTAAACTTTACAAGTTAGATACACTTTTCTTGCAAAAAAATCAATTAATTGGTTCGATTCCACCCGAGTTAGGTAACTTGAGTAGATTAACCGCTCTTGATTTATCACTCAATAACCTAACAGGTGGAATCCCGAACGAATTCTCGAACCTTCAACAACTTTCTCTTTTGAACCTTTTTATCAACAAGTTTCATGGCGAAATACCTGAGTTTATTTCTGAGCTTCCTAAATTGGAAGTACTTAAGCTTTGGAGGAATAACTTCACCGGAGTTATTCCTTCGAAGCTAGGTCATAATAGAAGATTAACCGAACTTGATTTGTCGACAAATAAACTCACCGGAATATTGCCAAAATCACTTTGTCTTGGAAAGAGATTAAAAATCTTGATCTTGCTTAACAACTTTTTGTTTGGTTCTTTGCCTAATGATCTTGGTCAATGCTACACACTTCAAAGAGTTAGAATTGGTCAAAACTACTTCACTGGTTCAATTCCACATGGTTTTCTTCATTTACCAAATTTATCTCTTTTGGAACTACAAAACAATTATCTCAATGGTGTGATTCCACAACAAAAAGCCAAAAGCAAAACAAAATCCAAATTAGAACAATGTAATCTATCAAACAATAGATTATCAGGTTCTTTACCAACTTCAATTGGAAATTTTCCAAATTTGCAAATTCTTCAGCTTAGTGGAAACAGATTCTCTGGTGAAATTCCATCAGATATAGGAAAACTCAAAAAAGTGCTTAAGTTAGATATAAGTAGCAACAAATTTTCAGGTACTATACCTATTGAGATAGGTAAATGTACCTTACTAACTTATTTAGATTTGAGCCAAAACAAATTATCAGGTCCTATTCCAATTCAACTTGCTCAAATTCATATACTAAACCATCTTAATGTCTCATGGAATCACTTAAGCCAAAATCTTCCTAAGGAGTTAGGTGCCTTAAAAGGCTTAACTTCAGCTGATTTCTCTCATAATAACTTCTCCGGTTCGATACCAGAAGGAGGACAATTCTCAACTTTTAAGTCAACTTGTTTTGAAGGTAATTCTCAACTATGTGGATATGAGTCCAATCCATGCAAAATTTCATCGACGAATGTATTGGAATCGCAACAAAAAAACAGTTCAAGAAACGGTTTTCGTGGAAAGTTTAAGCTCGTTTTCGCGTTGGCGTTATTGTTATGTTCATTGGTTTTTGCTATATTTGCTATAATCAAAAGTAGAAAATCAAGGAGGAGGAGTCACTCGAATTCGTGGAAGTTAACAGCATTTCAAAAAATGGAATACGGAAGCGAAGAAATCATAGGTTGTATAAAGGAAAGTAATGTTATAGGAAAAGGTGGAGCTGGTGTTGTGTACAAAGGAACAATGCCAAATGGAGACGAAATCGCGGTGAAGAAATTGTTAGGAATCAACAATGGTTCATCTTCTCATCAAGATAATGGTTTTTCAGCTGAGATTAAGACATTAGGTAGAATAAGACATAGATATATTGTTAGGTTGGTTGCATTTTGTTCAAACAAAGAAACAAATTTGCTTGTTTATGATTATATGGAAAATGGTAGTCTTGGTGAAGTTTTGCATGGAAAAAGAGGTGAGTTTTTGAAATGGGATGTTAGGTTGAAAATTGCTGTTGAAGCTGCTAAAGGATTATGTTATTTGCATCATGATTGTTCACCTTTGATTATTCATAGAGATGTTAAGTCAAATAATATTTTGTTGAATTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTTATGCAAGATAATGGAAATTCTGAATGCATGTCTTCTATTGCTGGTTCTTATGGATATATTGCTCCAGAATATGCATACACATTGAAAGTTGATGAGAAAAGTGATGTATATAGTTTTGGAGTGGTGCTACTAGAGCTCATAACAGGAAAAAGGCCAGTTGGGGATTTTGAGGAAGAAGGATTAGACATTGTTCAATGGACAAAAATGAAAACCAATTGGAACAAAGATATGGTGATTAAGATCCTTGATGAGAGGTTACCTCAAATTCCTTTAGATGAAGCAAAACAAGTGTTTTTTGTTGCCATGTTATGTGTTCATGAACATAGTGTGGAGAGACCAACCATGAGGGAAGTGGTTGAAATGCTTACACAAGCAAAATAA 2940 0.3344 MSTLFFFLLLVSFTSSSSLQLSLKNQASILVSMKHGFVFDKASNSCLNSWNISNYMSLCTWYGIQCDKKNMSIVSFDISKLNISGSFSSHVTKLYTLVNVSIQENSFYGEFPAEIHKLQSLKYLNISNNMFSGNLSWEFNKLKELEVLDIYNNGFNGSLPKNVTQMFKLKHLNFGGNYFNGKIPTSYGEMKELNFLSLAGNDLSGDIPSELGNLTSLEYLYLGYFNQFDGGIPNEFGKLINLVHLDLASCFLKGSIPNELGKLYKLDTLFLQKNQLIGSIPPELGNLSRLTALDLSLNNLTGGIPNEFSNLQQLSLLNLFINKFHGEIPEFISELPKLEVLKLWRNNFTGVIPSKLGHNRRLTELDLSTNKLTGILPKSLCLGKRLKILILLNNFLFGSLPNDLGQCYTLQRVRIGQNYFTGSIPHGFLHLPNLSLLELQNNYLNGVIPQQKAKSKTKSKLEQCNLSNNRLSGSLPTSIGNFPNLQILQLSGNRFSGEIPSDIGKLKKVLKLDISSNKFSGTIPIEIGKCTLLTYLDLSQNKLSGPIPIQLAQIHILNHLNVSWNHLSQNLPKELGALKGLTSADFSHNNFSGSIPEGGQFSTFKSTCFEGNSQLCGYESNPCKISSTNVLESQQKNSSRNGFRGKFKLVFALALLLCSLVFAIFAIIKSRKSRRRSHSNSWKLTAFQKMEYGSEEIIGCIKESNVIGKGGAGVVYKGTMPNGDEIAVKKLLGINNGSSSHQDNGFSAEIKTLGRIRHRYIVRLVAFCSNKETNLLVYDYMENGSLGEVLHGKRGEFLKWDVRLKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFMQDNGNSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKRPVGDFEEEGLDIVQWTKMKTNWNKDMVIKILDERLPQIPLDEAKQVFFVAMLCVHEHSVERPTMREVVEMLTQAK 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01549 979 Pfam Leucine rich repeat 483 543 IPR001611 GO:0005515
Trre5g01549 979 Pfam Leucine rich repeat 336 394 IPR001611 GO:0005515
Trre5g01549 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 339 627 - -
Trre5g01549 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 227 332 - -
Trre5g01549 979 Gene3D Ribonuclease Inhibitor 283 362 IPR032675 -
Trre5g01549 979 Pfam Leucine rich repeat N-terminal domain 24 67 IPR013210 -
Trre5g01549 979 Gene3D Phosphorylase Kinase; domain 1 668 780 - -
Trre5g01549 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Trre5g01549 979 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Trre5g01549 979 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515
Trre5g01549 979 SUPERFAMILY L domain-like 55 302 - -
Trre5g01549 979 Gene3D Ribonuclease Inhibitor 363 627 IPR032675 -
Trre5g01549 979 SUPERFAMILY Protein kinase-like (PK-like) 693 975 IPR011009 -
Trre5g01549 979 ProSiteProfiles Protein kinase domain profile. 701 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01549 979 SMART LRR_typ_2 263 287 IPR003591 -
Trre5g01549 979 SMART LRR_typ_2 142 166 IPR003591 -
Trre5g01549 979 SMART LRR_typ_2 190 214 IPR003591 -
Trre5g01549 979 SMART LRR_typ_2 118 141 IPR003591 -
Trre5g01549 979 SMART LRR_typ_2 360 382 IPR003591 -
Trre5g01549 979 SMART LRR_typ_2 335 359 IPR003591 -
Trre5g01549 979 SMART LRR_typ_2 554 578 IPR003591 -
Trre5g01549 979 SMART LRR_typ_2 482 506 IPR003591 -
Trre5g01549 979 Gene3D Transferase(Phosphotransferase) domain 1 781 979 - -
Trre5g01549 979 SUPERFAMILY RNI-like 256 601 - -
Trre5g01549 979 SMART serkin_6 701 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01549 979 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Trre5g01549 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 670 780 - -
Trre5g01549 979 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Trre5g01549 979 FunFam Leucine-rich repeat receptor-like protein kinase 23 185 - -
Trre5g01549 979 ProSiteProfiles Leucine-rich repeat profile. 361 382 IPR001611 GO:0005515
Trre5g01549 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 193 977 - -
Trre5g01549 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 781 979 - -
Trre5g01549 979 Pfam Protein tyrosine and serine/threonine kinase 703 975 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01549 Trre-Chr5 11260442 11265094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01549 44 977 Receptor kinase-like Gene Family AT5G65700 57.112 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g01549 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01549 - - gmx:100803075 1449.49