Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01540 ATGAACAACACTTTTCCTGAATGGAATTTTGGGAGTGATACTTTTGTCACCAATCAAAAGAAACAACCTATGGGGCTAGACCATGAACTTGTGGAGCTTATATGGCAGAATGGACAAGTAGTATTACATAGCCAAACAAATAAGAAACCACTTGTGAATACAAATTCAAACATTTCAAGACAAGTTCATAAGAATCTTCAATCAACAACAACAATAAGTAACTTGATTCAAGCTGATGAAACAGTTTCATGGATTCAACAATACCCTCTTGAGGATCCACTTGAACAAGAATTATGTTCAAATTTATTAAATGAACTTCCACCTTGTGATGTTGAGTCTTACAACTCACAAACAACGGATATGAAACCGCCTTTTGTTGAGGAATTCTCGGCTATTCCTATGCCGGCTCCAAGATTTCATCATCATGTTTCCGATACATTGCAAAGAAACAATGATTTGTGTGGAACAAATAAGGTCGTAAACTTTTCTCACTTTTCAAGACTACCTAATGTTTCTTTAGCATCTTCTAACGTCGATGAAAAGTTTAGAGACAAAGTTACGGGTAATAATTTGTCACAATGTGATATTAGAGAGTGTTCGACAATGACAGTTGGTTCGAGTTATTGTGGAAGCAATCACGTCCAACAAGATCCGGATGTAAGCAGGGTATCGAGTAATGGTGTTTGGACTACTACTTTATCTGCCGAGCAGGAAATAATCAAAGATGACGTTCATAAAACAATTCCTCGGCATGAGAAAGGGAAATCAGAGATGCTTGAACCGGTGGTTACTTCATCTTCTGGTGGTTCGGGCAGTAGCCTTGGAAAAACTTGTTCTTTATCTACAAGAAGCCACGGACAAAAGCGAAAAGAGATAGACGTTGAAGATTCAGTGGAACAAAGCGAGGACACGGAATTTAAACCAGCCGTGCGACAGAAGACATCTCAGAGGTCAGGGTCAGCTCGAAGGAACCGGGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGGCGAAGAGATAGGATTAATGAGAAGATGAAAGCGTTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAAGCAATTGATTACCTAAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGCAACCAATGATGCTATCAGGATATCAACAATATATGTCACAAATGAGTATGGGAATGACTACACCGTCATTTCCTCCGCTTCAAAATCCGATGCAAGTACCGAGAATGCCTCTTGATCCATCGGTATCTTCGCCTCAGACACCAATTCAGACATTAATGTGCCAAAATCCTCTTTTAGGTGCCTTTAATTATCAAAATCAGATACAAAATCCAGCTCTTTCGGAGCAATACGCGCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAACTGTACAAAATAGTCAAACAATGATTCCAAGCAGCACTAGTAGTGGACCAATGAATGGAGCTGAAAACATTAATGATGCTGTGATTGGCAAAATGGGTAGGCCAATACATAGCTCTCCTCTCTATTGTCATAGCATCAAATAG 1608 0.3955 MNNTFPEWNFGSDTFVTNQKKQPMGLDHELVELIWQNGQVVLHSQTNKKPLVNTNSNISRQVHKNLQSTTTISNLIQADETVSWIQQYPLEDPLEQELCSNLLNELPPCDVESYNSQTTDMKPPFVEEFSAIPMPAPRFHHHVSDTLQRNNDLCGTNKVVNFSHFSRLPNVSLASSNVDEKFRDKVTGNNLSQCDIRECSTMTVGSSYCGSNHVQQDPDVSRVSSNGVWTTTLSAEQEIIKDDVHKTIPRHEKGKSEMLEPVVTSSSGGSGSSLGKTCSLSTRSHGQKRKEIDVEDSVEQSEDTEFKPAVRQKTSQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIDYLKSLQLQLQVMWMGSGMQPMMLSGYQQYMSQMSMGMTTPSFPPLQNPMQVPRMPLDPSVSSPQTPIQTLMCQNPLLGAFNYQNQIQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQTVQNSQTMIPSSTSSGPMNGAENINDAVIGKMGRPIHSSPLYCHSIK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01540 535 MobiDBLite consensus disorder prediction 284 310 - -
Trre5g01540 535 SMART finulus 331 380 IPR011598 GO:0046983
Trre5g01540 535 PANTHER TRANSCRIPTION FACTOR PIF3 17 500 IPR044273 GO:0003700|GO:0006355
Trre5g01540 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Trre5g01540 535 Coils Coil 331 351 - -
Trre5g01540 535 Pfam Helix-loop-helix DNA-binding domain 329 375 IPR011598 GO:0046983
Trre5g01540 535 FunFam Basic helix-loop-helix transcription factor 320 383 - -
Trre5g01540 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 390 IPR036638 GO:0046983
Trre5g01540 535 CDD bHLH_AtPIF_like 325 387 IPR047265 -
Trre5g01540 535 Gene3D - 320 381 IPR036638 GO:0046983
Trre5g01540 535 MobiDBLite consensus disorder prediction 260 282 - -
Trre5g01540 535 MobiDBLite consensus disorder prediction 248 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01540 Trre-Chr5 11172434 11174883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01540 8 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.825 3.10e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g01540 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01540 K16189 - gmx:100800166 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01540 5 11172434 11174883 Trre5g01540 5 11172434 11174883 ECH