Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01538 ATGGCTAGGCACAAGGTGAAACTTGCATACATAGAATGTAATGCAAAGAGGAAGGCATCATTCAGAAAGAGAAAAATTGGTATATTCAAGAAGCTTAAAGAAATCACCACCCTATGTGGAATCGAAGCTTGTGCAGTAATCTATGGTAATAACAATCCTCAACCAGAGGTTTGGCCATCAGATTCAGGAGCGAAAAGTGTGATATCTAGGTTTGTGAATTTGCCTAACCCGGAGAAAAGCAAAAAGATGATGGATCAAGAGGCATTCTTGGGGAAAAGCATCGAGAAAGCCTACGAGCAGCTGAAGAAAGAAAGGGAGGAAACTCGGAAAATTGTTATGACCATAATCATGGATCATTACATTAATACTAAAGAATTTAATGGCAATTCAATGAACAAATATGATCTTAATGATATGTCGTGTTTTGTTGATGAGAATCTAAAGAAAATCTACCAAAAGATGGAAGGAATGCAAATTGAATCACAAGAGCATGATGCAGACCAAGCTGAAGTAATGAATGGAACAAAGAAACAATAA 537 0.3687 MARHKVKLAYIECNAKRKASFRKRKIGIFKKLKEITTLCGIEACAVIYGNNNPQPEVWPSDSGAKSVISRFVNLPNPEKSKKMMDQEAFLGKSIEKAYEQLKKEREETRKIVMTIIMDHYINTKEFNGNSMNKYDLNDMSCFVDENLKKIYQKMEGMQIESQEHDADQAEVMNGTKKQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01538 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g01538 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g01538 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g01538 178 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre5g01538 178 Coils Coil 91 111 - -
Trre5g01538 178 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Trre5g01538 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g01538 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre5g01538 178 PANTHER MADS BOX PROTEIN 3 151 - -
Trre5g01538 178 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Trre5g01538 178 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g01538 178 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01538 Trre-Chr5 11161037 11161699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01538 1 155 Type I MADS-box Gene Family AT5G48670 45.223 2.67e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g01538 SRF-TF 3.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01538 - - tpra:123917281 262.307