Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01535 ATGACTGGTAGAAATACGGAACTTGAATACAAAACTGACAATTCGAAGAGGAAGTCAACATTTCAGAAAAGGAAAAATGGTATAATTAAGAAGGCTAAAGAAATCACCACTCTTTGTAGAACTGATACATGTGCTATTATCTATGAAGAGAACAATCCTCGAGCAACTGTTTTCCCTTCAAAAGATGGAGTCCAAAAGGTGTTAAACAAGTTTAGGAATTTTCCAGAATCAGAACAAAGGAAAACAATGGTGGATCATGAGGGGTTTGTGAGGCAATCCATAGAAAAGGCCCGTGCGAAGTTGAAGAAAGAAAAGGACAAATCCAAGAAGAAGGAAATGAATAATCAAATTGATCATTTCATTCAAACTGGTGAATTTGATGGGTATGTAAGTGAAAGTGATCTCGAAGATTTGTCGTCACTTATTGATTCAAATATAAAGGAAGTCGAACATAGGATTGAATCGAGTCAAGCTCGGGAGGAAACTGACAATTAA 495 0.3616 MTGRNTELEYKTDNSKRKSTFQKRKNGIIKKAKEITTLCRTDTCAIIYEENNPRATVFPSKDGVQKVLNKFRNFPESEQRKTMVDHEGFVRQSIEKARAKLKKEKDKSKKKEMNNQIDHFIQTGEFDGYVSESDLEDLSSLIDSNIKEVEHRIESSQAREETDN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01535 164 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre5g01535 164 PANTHER MADS BOX PROTEIN 10 154 - -
Trre5g01535 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g01535 164 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g01535 164 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g01535 164 Coils Coil 91 116 - -
Trre5g01535 164 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Trre5g01535 164 SUPERFAMILY SRF-like 5 95 IPR036879 GO:0003677|GO:0046983
Trre5g01535 164 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g01535 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01535 Trre-Chr5 11134661 11135626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01535 1 154 Type I MADS-box Gene Family AT5G48670 40.000 7.82e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g01535 SRF-TF 9.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01535 - - tpra:123917277 226.868