Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01532 ATGAATAATAATTCAAAGAGAAGTGGTGTAAGAAAGTATCACAAATCAGAACAGCCACGTTTGAGATGGACACCTGAGCTCCATGAATACTTTGTTCAAACTGTTGAAAGTCTTGGTGGAAAACATAAGGCAAGTCCAAAACATATTTTGAATATGATGCAAGTGAAGGGACTAAAAATCTCACACATTAAAAGTCATCTTCAGATGTACAGAAACGAGAAGGGGCTGAGGATTCTTGCACCAATACTTGAAGAAAATGTACAATTCAATAATCACCCAACCTGCTCCACTTGTTCACCCCAGAGATCGAGGAATATCAATCAAGAACTTCAGCCATTATACAACAAAGGACTTTCACAAACAAGAGAAACGGATCATTATTATGATCTAAATCAGGAGCCTGAGTCAAGTGAATGCTTTCTTAGTGATATGTCAAATGAAGAAGGGAATAGTAGGAATACCAAATATCTAAATCTCCCATTCCCTTTCAGTTCTCTGTTAATTCCAGTGCCAATGGTGCATAATGATCAAGGCAGAACACATTTTTCTTCACTAAATTCGAGAGATAATCACTTTGTAGACTCTAGTTCTATAAAATCTAATGGGAGTGATCATATAAACTTAGACCTATCAATTTGA 639 0.3615 MNNNSKRSGVRKYHKSEQPRLRWTPELHEYFVQTVESLGGKHKASPKHILNMMQVKGLKISHIKSHLQMYRNEKGLRILAPILEENVQFNNHPTCSTCSPQRSRNINQELQPLYNKGLSQTRETDHYYDLNQEPESSECFLSDMSNEEGNSRNTKYLNLPFPFSSLLIPVPMVHNDQGRTHFSSLNSRDNHFVDSSSIKSNGSDHINLDLSI 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01532 212 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 111 IPR046955 GO:0003700
Trre5g01532 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Trre5g01532 212 FunFam Two-component response regulator 14 76 - -
Trre5g01532 212 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Trre5g01532 212 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Trre5g01532 212 Gene3D - 18 75 - -
Trre5g01532 212 SUPERFAMILY Homeodomain-like 17 71 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01532 Trre-Chr5 11094875 11099372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01532 2 74 G2-like Transcription Factor Family AT1G14600 58.904 1.63e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre5g01532 Myb_DNA-binding 3.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01532 - - psat:127085289 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01532 5 11094875 11099372 Trre5g01532 5 11094875 11099372 ECH