Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01528 ATGTACCATTTTCTGATAGCTAGATTCACTCATAGAATAACCAATCATTCTACTCTTCATTGCTGCAATGCTTTTTCTATATTCTTCAATTCTCGTTCTTTTACTATTTCCAACACAAATCATCATCAAGGTGACTCTTTTACGTTATCAAGCTTCATTGATTCATGTGGGTTGTCCCCTGAAAAAGCCCTTAAACTCTCTAAAAGGTTGAAATTCAAGGACCCTAATGGCCCAAATGCTGTAATTCAACTTTTCAGAAATTATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAAACACCCTACTTTGCTTTTATCAAACCCCGAAAAGACCCTTTTGCCCAAGTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAATCCTAATTGGTAACATTCCCCTTTTAACTACAAGTTTGGAGAAAAACCTTAAACCTCGTTATCTAATTATTAGGAGCCTTGTTCGCGATGATAAAGAGGTTGTTTCGGTTTTGAAGCATTGGTCATGGACCTTTTACAATAATTCCATGGTAAATGATTCTGTTCCAAATATCGAGGTTTTGAGGAAGCTTGGTGTTCCTCAACGTTTCATTTCCCTTTTGGTATGCAATTTTCCCAAAGTAGCATTCACCAAACATTCTAGATTTGTTGAGGCTGTTAATTTTGTTAAGGAAATGGGGTTCGATCCTTTGAAATCGAATTTTGTTTTGGCACTTCAAGGAATTGTAAAGATGGACAAAGAGACTTGGGAGTCAAAATTGAAGATTTTTGAGAGGTGGGGCTGGTCGAAAGATATCTATGTTTTGGCTTTCCAAAGATATCCTCAGTATATATTGATCTCAGAAAAAAAGATTATGAAAACAATGAACTTCTTGGTGAAGGATATGGGTCTTACCCCAGAAGACATTGCTAGAAGACCTGGTATTCTGAACCGCAACTTAGAGAAGACAATAATGCCTAGATGTGCAGTTGTTAACATTTTGAAGTCAAGGGGTTTGATAAAGAGTGATTTGCTCATAGGTACCTTCATTATCGTAACTGAGAAAAAGTTTTTGGAGAGATATGTTACCCGATATCAGAAAGATTTGCCACTCTTATTGGATGCATATAAAGAGAGGCATTTATTTGGAGAAATTTATGATTGA 1158 0.3653 MYHFLIARFTHRITNHSTLHCCNAFSIFFNSRSFTISNTNHHQGDSFTLSSFIDSCGLSPEKALKLSKRLKFKDPNGPNAVIQLFRNYGFSDSQLSTLVKKHPTLLLSNPEKTLLPKFLQSIGVSTTDLPKILIGNIPLLTTSLEKNLKPRYLIIRSLVRDDKEVVSVLKHWSWTFYNNSMVNDSVPNIEVLRKLGVPQRFISLLVCNFPKVAFTKHSRFVEAVNFVKEMGFDPLKSNFVLALQGIVKMDKETWESKLKIFERWGWSKDIYVLAFQRYPQYILISEKKIMKTMNFLVKDMGLTPEDIARRPGILNRNLEKTIMPRCAVVNILKSRGLIKSDLLIGTFIIVTEKKFLERYVTRYQKDLPLLLDAYKERHLFGEIYD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01528 385 Gene3D Transcription termination factor 3, mitochondrial 138 367 IPR038538 -
Trre5g01528 385 PANTHER CGI-12 PROTEIN-RELATED 45 363 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 SMART mt_12 96 125 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 Pfam mTERF 246 355 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 Pfam mTERF 82 233 IPR003690 GO:0003690|GO:0006355
Trre5g01528 385 FunFam Mitochondrial transcription termination factor-like 144 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01528 Trre-Chr5 11043220 11044685 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01528 mTERF 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01528 K15032 - gmx:106799612 448.358