Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01527 ATGAATCCAAACATCAATGATGAAATCCCACTTCAGACTATGGTAAGACCATGCTGTTCTGCTAGATTCACTCATACAAGAACCCTTCATTCAACTGTTCTTTGCCGCAATGTTTTTTCTAATTTCTGCAGCTATCGTTATTTCTCTGTTTTCAACACAAATCATCATCAAGGTGACTCTTTTACTTTATCAAGCTTCATTAATTCATGTGGGTTGTCCCCTGAAACATCCCTTAAACTCTCTAAAAAGTTGCAAATCAGAAACTCTGATGATGGCCCAAATGCTGTTATTCAACTTTTCAGAAACAATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAGACACCCTTTTGTGCTTTTATCAAACCCTGAAAAGACCCTTTTGCCTAAACTCAAGTTTTTGCAATCCTTTGGGGTTTCAATCACTGATCTCCCCAAAATCCTAATTTTGAACCCTGGTTTTTTAAAACTAAGTGTGGAGAAAACCCTTATACCTCGTTATCACTTTATTAGGAGCCTTGTTCCAAATGATAAAAAGTTAGTTTCAGTTTTTAAGCGTTGGAGGTTTAACTTTTACGGTTATTCCATGGTTCCAAACATTGAGGTTTTGAGGAAACTTGGTGTGCCTCAAAGTTGTGTTTCCCTTTTGGTATCCAATTTTCCCAATGAAGCATTCGCCAAGCATTCTACATTTGTTGAGGCTGTTAATTTTGTCAAGGAAATGGGGTTCGATCCTTTGAAATCGAATTTTGTTTTGGCACTATATGTAATTGTGAATATGGACAAAGAGACATGGGAATCAAAATTGAAGATTTTTGAGAGGTGGGGATGGTCGAAAGATATCTGTCTTTTGGCGTTTCAAAAGCATCCTCAGTATGTGACGGTCTCAGAAAAAAAAATTATAAAAACAATGAACTTCTTGGTGAAGGATATGGGTATTACCCCAGAAGACATTGCTAGAAGCCCTAGTATTCTGAACCGTAACTTGGAGAAGACAATAATGCCTAGATGTGCAGTTGTTAAGATTTTGAAGTCAAGGGGGTTGATAAAGAGTAGTTTGAGATTAAGTAGCTTTCTTATCATAAGTGAGAAAGCATTTTTGGAGAGATATGTTACCCCATTCCAGAAAGATTTGCCGCTGGTATTGTCTGTATATGAAGGTCAGAAGTTAGATTGA 1182 0.3706 MNPNINDEIPLQTMVRPCCSARFTHTRTLHSTVLCRNVFSNFCSYRYFSVFNTNHHQGDSFTLSSFINSCGLSPETSLKLSKKLQIRNSDDGPNAVIQLFRNNGFSDSQLSTLVKRHPFVLLSNPEKTLLPKLKFLQSFGVSITDLPKILILNPGFLKLSVEKTLIPRYHFIRSLVPNDKKLVSVFKRWRFNFYGYSMVPNIEVLRKLGVPQSCVSLLVSNFPNEAFAKHSTFVEAVNFVKEMGFDPLKSNFVLALYVIVNMDKETWESKLKIFERWGWSKDICLLAFQKHPQYVTVSEKKIIKTMNFLVKDMGITPEDIARSPSILNRNLEKTIMPRCAVVKILKSRGLIKSSLRLSSFLIISEKAFLERYVTPFQKDLPLVLSVYEGQKLD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01527 393 FunFam Mitochondrial transcription termination factor-like 161 380 - -
Trre5g01527 393 PANTHER CGI-12 PROTEIN-RELATED 58 375 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 SMART mt_12 111 142 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 SMART mt_12 285 316 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 SMART mt_12 216 246 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 SMART mt_12 317 351 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 SMART mt_12 250 280 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 Gene3D Transcription termination factor 3, mitochondrial 70 193 IPR038538 -
Trre5g01527 393 Gene3D Transcription termination factor 3, mitochondrial 194 380 IPR038538 -
Trre5g01527 393 Pfam mTERF 259 369 IPR003690 GO:0003690|GO:0006355
Trre5g01527 393 Pfam mTERF 97 246 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01527 Trre-Chr5 11038324 11039581 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01527 mTERF 1.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01527 K15032 - gmx:106799612 412.535