Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01526 ATGTACCATTTTCTGATAGATAGATTCACTCATACAACAAGAACCCTTCTTTGCCGCAATGCTTTTTCTAATTACACTTATCGTTGTTTCTTTGTTTCCAACACAAATCAAGATGACTCATTTAAGCTAACAAGTCTCGTAAACTCATGTGGGTTGTCCCCTGAAAAAGCCCTTAAACTAACAAAAAGGTTGAAAATCAAAAACCCTGATGATGGCCCAAATGCTGTAATTCAACTTCTCAGAACCTATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAAATGTCCTTCAGTGCTTTTATCAAACCCTGAAAAGACCCTTTTGCCAAAACTCAAGTTTTTGCATTCCATTGGGGTTTCAACTACTGATTTCCCCAAAATTCTCATTCGGCAACCTTCCATATTGAGAGTAAGTTTGGAGAAAAACACTTTGCCTCGTTATGAGATTATTAGGAGCCTTGTTTGCAATGATGAACAGGTAATTTCAGCTTTGAAGCTTGGATCGTGGAACTTTAACAATGATTCCATGGTTAATGATTCTGTTCCAAACATTGAGGTTTTGAGGCAACTTGGCGTGCCGCAAACTTCCATTTCCCATTTGGTATCCAATTATGCCAATGTAGCATTCGTCGATCATTCTAGATTTGTTGAGGCTGTTAATTCAGTTAAGGAAATGGGGTTCAATCCTTCAAAGTTGAATTTTGTTTTGGCACTTCGAGTATTTGCAGTGATGAACAAAGAAATTTTGGAATCAAAATTGAAGATTTTTGAGAGGTTGGGTTGGTCGAAAGATATTTGTGTTTTCGCTTTCCAAAGATATCCTCAGTATATATTGATCTCAGAAAAAAAGATTATGAAAACAATGAACTTCTTGGTGAAGGATATGGGTCTTGCACCAGAAGACATTGCTACAAGCCCTGGTATTCTGAACCGCAACTTAGAGAAGACAATAATGCCTAGATGTGCAGTTGTTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTAGTTTGAGCTTAAGTAGCTTTATTATCATAACTGAGAAAAGATTTTTGGAGAGATATGTTTCCCCATTTCAGAAAGATTTGCCACTGGTATTGGCTGTATATGAAGGTCAGAAGTTAGATTGA 1134 0.3695 MYHFLIDRFTHTTRTLLCRNAFSNYTYRCFFVSNTNQDDSFKLTSLVNSCGLSPEKALKLTKRLKIKNPDDGPNAVIQLLRTYGFSDSQLSTLVKKCPSVLLSNPEKTLLPKLKFLHSIGVSTTDFPKILIRQPSILRVSLEKNTLPRYEIIRSLVCNDEQVISALKLGSWNFNNDSMVNDSVPNIEVLRQLGVPQTSISHLVSNYANVAFVDHSRFVEAVNSVKEMGFNPSKLNFVLALRVFAVMNKEILESKLKIFERLGWSKDICVFAFQRYPQYILISEKKIMKTMNFLVKDMGLAPEDIATSPGILNRNLEKTIMPRCAVVKILKSRGLIKSSLSLSSFIIITEKRFLERYVSPFQKDLPLVLAVYEGQKLD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01526 377 Pfam mTERF 246 353 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 Pfam mTERF 77 235 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 Gene3D Transcription termination factor 3, mitochondrial 138 364 IPR038538 -
Trre5g01526 377 PANTHER CGI-12 PROTEIN-RELATED 43 359 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 FunFam Mitochondrial transcription termination factor-like 141 364 - -
Trre5g01526 377 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 SMART mt_12 234 264 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 SMART mt_12 200 230 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Trre5g01526 377 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01526 Trre-Chr5 11034585 11035718 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01526 mTERF 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01526 K15032 - gmx:106799612 394.045