Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01525 ATGTATTATCATTTTCTAATAGCTGCTAGATTCACTCATAGAATAACCAATCATTCTACTATTCATTGCTGCAATGCTTTTTCTATATTCTTCAATTCTCGTTCTTTCACTATTTCCAACACAAATCACCAAGATCACTCTTTTACGTTATCAAGCTTCATTGATTCATGTGGGTTGTCCCCTAAAACATCCCTTAAACTCTCTAAAATGTTGCAAATCAGAAACTCTGATGATGGCCCAAATGCTGTTATTCAACTTTTCAGAAACTATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAGACACCCTTTTGTGCTTTTAGCAAAACCTGAAAAGACCCTTTTGCCCAAACTCAACTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAATTCTACTTATGAACACTAATTTGTTAAAACTAAGTTTGGAGAAAAACATTATACCTCGTTATCACATTATTAGGAGCCTTGTTCGCAATGATAAAGAGGTAGTTTCAATTTTTAAGCGTTGGAGATATTACTTTTACAGTGATTCCATGGTTCCAAACATCGAGGTTTTGAGGAAGCTTGGTGTGCCTCAAAGTTCTGTTTCCCTTTTGGTATCCAATTTTCCCAATGTAGCATTCTGCGAGCATTCTAGATTTGTTAAGGCTGTTAATATAGTAAAGGAAATGGGGTTCGATCCTTTGAAGTCGAATTTTGTTTTGGCAGTTCGAGTAATTGCAAGGATGGACAAAGAGATATGGGAATCAAAATTGAAGATTTTTAAGAGGTGGGGATGGTCGAAAGATATCTGTCTTTTGGCGTTCCAAAAGCATCCTCTGTATATGACCATCTCAGTTAAAAAGTTTACGAAAATAATGAATTTCTTTTTGAAGGATATGGGTCTTACCCCAAAAGACATTGCTAGAATGCCTGGGATGCTAATGCGCAGCTTCGAGAGGAGAATTGTTCCTAGATGTAAAGTTGTTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTGGTTTGTTCATAAGTAGCTTTATTCGGGTAACTGAGAAAGAGTTTCTGGAAAGATATGTGACCCCATTTGAGGAAGATTTGCCATTGATATTGGATGCATATAAAGTTCAGAAGTCTAATTGA 1143 0.364 MYYHFLIAARFTHRITNHSTIHCCNAFSIFFNSRSFTISNTNHQDHSFTLSSFIDSCGLSPKTSLKLSKMLQIRNSDDGPNAVIQLFRNYGFSDSQLSTLVKRHPFVLLAKPEKTLLPKLNFLQSIGVSTTDLPKILLMNTNLLKLSLEKNIIPRYHIIRSLVRNDKEVVSIFKRWRYYFYSDSMVPNIEVLRKLGVPQSSVSLLVSNFPNVAFCEHSRFVKAVNIVKEMGFDPLKSNFVLAVRVIARMDKEIWESKLKIFKRWGWSKDICLLAFQKHPLYMTISVKKFTKIMNFFLKDMGLTPKDIARMPGMLMRSFERRIVPRCKVVKILKSRGLIKSGLFISSFIRVTEKEFLERYVTPFEEDLPLILDAYKVQKSN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01525 380 Gene3D Transcription termination factor 3, mitochondrial 141 367 IPR038538 -
Trre5g01525 380 PANTHER CGI-12 PROTEIN-RELATED 45 362 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 SMART mt_12 170 198 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 FunFam Mitochondrial transcription termination factor-like 148 367 - -
Trre5g01525 380 Pfam mTERF 248 356 IPR003690 GO:0003690|GO:0006355
Trre5g01525 380 Pfam mTERF 84 233 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01525 Trre-Chr5 11032535 11033677 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01525 mTERF 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01525 K15032 - gmx:106799612 402.519