Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01522 ATGTATTATCATTTCCTTATAGCTGCTAGATTCACTCATAGAAAAACCCTTCATTCTACTCTTCATTGCCGCAATGCTTTTTCTATATTCTTCAATTCTCGTTCTTTCACTGTTTCCAACACAAATCGTCATCAAGGTGAATCTTTTACTTTATCAAGCTTCATTAATTCATGTGGGTTGTCTCCTGAAACATCCCTTAAACTCTCTAAAAAGTTGCAAATCAGAAACTCTGATGATGGCCCAAATGCTGTTATTCAACTTTTCAGAAACTATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAGACACCCTTTTGTGCTTTTATCAAAACCTGAAAAGACCCTTTTGCCCAAACTCAACTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAATCCTAATTGGGAACACTGATTTTTTAAAACTAAGTTTGGAGAAAAACCTTATACCTCGTTATCACATTATCAGGAGCCTTGTTCGCAATGATAAAGAGGTAGTTTCAGTTTTTAAGTGTTGGAAATATTACTTTTTTTACAGTGATTCCATGGTTCCAAACATCGAGGTTTTGAGGAAGCTTGGTGTGCCTCAAAGTTGTGTTTCCCTTTTGGTATCCAATTATCCCAGTGTAGCATTCTGCAAGCATTCTAGATTTGTTGAGGCTGTTAATATAGTAAAGGAAATGGGGTTCAATCCTTTGAAGTCCAATTTTGTTTTGGCACTTCGAGTAATTGCGGGGCTGGTCAAAGAGACATGGGAATCAAAATTGAAGATTTTTGAGAGGTGGGGATGGTCGAAAGATATCTGTCTTTTGGCGTTCCAAAAGCATCCTCAGTATGTGACGGTCTCGGAAAAAAAGATTATAAAATCAATGAACTTCTTGGTGAAGGATATGGGTATTACCCCAGAAGACATTGCTAGAAGCCCTAGTATTCTGAACCGTAACTTGGAGAAGACGTTAATACCTAGATGTGCAGTTGTTAAGATTTTGAAGTCAAGGGGTTTGATAAAAAGTGATTTGCGCATAGGTACCTTTATTAAAATAAGCGAGAAAAGATTTTTGGAGAGATATGTTACCCCATTTCAGAAAGATTTGCCACTGGTATTGGCTGTATATGAAGGTCAGAAGTTAGATTGA 1149 0.3734 MYYHFLIAARFTHRKTLHSTLHCRNAFSIFFNSRSFTVSNTNRHQGESFTLSSFINSCGLSPETSLKLSKKLQIRNSDDGPNAVIQLFRNYGFSDSQLSTLVKRHPFVLLSKPEKTLLPKLNFLQSIGVSTTDLPKILIGNTDFLKLSLEKNLIPRYHIIRSLVRNDKEVVSVFKCWKYYFFYSDSMVPNIEVLRKLGVPQSCVSLLVSNYPSVAFCKHSRFVEAVNIVKEMGFNPLKSNFVLALRVIAGLVKETWESKLKIFERWGWSKDICLLAFQKHPQYVTVSEKKIIKSMNFLVKDMGITPEDIARSPSILNRNLEKTLIPRCAVVKILKSRGLIKSDLRIGTFIKISEKRFLERYVTPFQKDLPLVLAVYEGQKLD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01522 382 FunFam Mitochondrial transcription termination factor-like 149 369 - -
Trre5g01522 382 Gene3D Transcription termination factor 3, mitochondrial 142 369 IPR038538 -
Trre5g01522 382 PANTHER CGI-12 PROTEIN-RELATED 46 364 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 Pfam mTERF 253 358 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 Pfam mTERF 85 235 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 SMART mt_12 171 200 IPR003690 GO:0003690|GO:0006355
Trre5g01522 382 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01522 Trre-Chr5 11025185 11026333 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01522 mTERF 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01522 K15032 - gmx:106799612 435.647