Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01487 ATGTCTTCCGACACTTCTATGAAAGGGGAATTGTCGAGGAAGACATCGTTTTTGGGTTTGAAGCTATGGGTTTTGATAGGAATAGGTGTTGGTGCATTTATAGTTCTGATTCTTGGTTTATTATCTATATGGATAACGTTTCGGAGAAAAACACGGAGATCGGTTGACAAGTACTCTTCATCGCAAATACCACATGTCTCGAAAGATATCAAAGTCGACAAGGTTGGTGTACAGCCGTCTCATGATCAAGTAGAGAGTGTGTCTATTCATGTTCATGATAACATGGCAAGTGATAAAAATTCAGATAAGTTGTTTGTTCATTTGAGTAAATCTAGTGATCCTGATAACATTAGTCAGTGTAGCTCGGTTTATCACCACGAGAGAGGATTAAGTTCGATGTCGGGAGAAGATGGAAACTTTGGAACTGTTAAGAAGCAGTATATGGTAACTGCTTCTCCTCTGGTTGGATTGCCTGAAGGTTCGCATCTTGGGTGGGGCCATTGGTTCACACTTAGAGATCTCGAACTTTCGACTAACCGTTTCGCTGCTGCAAATGTGATCGGTGAGGGTGGATATGGAGTTGTTTATAAGGGAAGATTGATCAATGGATCTGAGGTTGCAGTTAAGAGACTTCTTAACAACTTGGGACAAGCAGAGAAAGAATTTAGGGTTGAAGTCGACGCTATAGGCCACGTCAGACATAAACATCTGGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCACAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTGCATGGTGCAATGAGACAACATGGAGTACTTACGTGGGAAGCTCGCATGAAAGTTATTCTAGGGACAGCGAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCGAGCAACATTTTAATTGATAGCGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGATTCAAGTGAAAGTCATATAACTACCAGAGTAATGGGGACATTTGGTTATGTTGCACCAGAATATGCTAATACCGGCTTGTTAAACGAGAAGAGTGACATTTACAGTTTTGGTGTTCTCCTACTAGAAGCGATCACCGGAAGGGACCCTGTAGACTATACGCGTCCTGCCAACGAGGTGAATCTTGTTGAGTGGATGAAGATGATGGTGGGGACAAAAAGGATTGAGGAAGTTGTGGACTCCAGCCTTGAAGCAAAACCGCCAACTCGTGCCTTAAAGCGTGCCCTTCTTGCTGCGTTTAGATGTGTTGATCCTGATTCTGAGAAGAGACCCAAAATGAGTCAGGTTGTAAGGATGCTTGAAGCCGATGAATATCCATTCAGAGAGGATCGAAGGAATAGAAGGAGCCGTACCGCCAGCATGGAAATTGAATCTCTAAAGGATATCTCCGGTCCTTCTGATATCGATAAGACGACGAAAAGTTCCGAAGAATGTGCACTCGAGACAACTCAATAA 1512 0.4239 MSSDTSMKGELSRKTSFLGLKLWVLIGIGVGAFIVLILGLLSIWITFRRKTRRSVDKYSSSQIPHVSKDIKVDKVGVQPSHDQVESVSIHVHDNMASDKNSDKLFVHLSKSSDPDNISQCSSVYHHERGLSSMSGEDGNFGTVKKQYMVTASPLVGLPEGSHLGWGHWFTLRDLELSTNRFAAANVIGEGGYGVVYKGRLINGSEVAVKRLLNNLGQAEKEFRVEVDAIGHVRHKHLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSSESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVNLVEWMKMMVGTKRIEEVVDSSLEAKPPTRALKRALLAAFRCVDPDSEKRPKMSQVVRMLEADEYPFREDRRNRRSRTASMEIESLKDISGPSDIDKTTKSSEECALETTQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01487 503 FunFam serine/threonine-protein kinase PBS1-like 158 256 - -
Trre5g01487 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Trre5g01487 503 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Trre5g01487 503 MobiDBLite consensus disorder prediction 481 495 - -
Trre5g01487 503 MobiDBLite consensus disorder prediction 459 503 - -
Trre5g01487 503 Pfam Protein kinase domain 184 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01487 503 Gene3D Phosphorylase Kinase; domain 1 163 256 - -
Trre5g01487 503 PANTHER OS01G0323000 PROTEIN 1 474 - -
Trre5g01487 503 CDD STKc_IRAK 187 453 - -
Trre5g01487 503 ProSiteProfiles Protein kinase domain profile. 181 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01487 503 Coils Coil 201 221 - -
Trre5g01487 503 Gene3D Transferase(Phosphotransferase) domain 1 257 470 - -
Trre5g01487 503 MobiDBLite consensus disorder prediction 459 474 - -
Trre5g01487 503 SUPERFAMILY Protein kinase-like (PK-like) 164 454 IPR011009 -
Trre5g01487 503 SMART serkin_6 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01487 503 FunFam Putative receptor-like serine/threonine-protein kinase 257 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01487 Trre-Chr5 10726751 10729247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01487 19 455 Trihelix Transcription Factor Family AT1G70460 40.632 9.62e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre5g01487 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01487 - - gmx:100813931 818.15