Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01480 ATGTTGTTGTTTTCTGATTCAATGTTGAAATTCAATCTCTTTCATGTTTTCAATCATAGTCATACAACACTTCACTATACTGTAACTGTTCATTGCCGCAATCATTTTTCTAATAATTTATCTGTTTGCAACACAAATCAAGATGATTCATTTAAGCTAACAAATCTCGTAAACTCATGTGGGTTGTCACCAGAAAAAGCCCTTAAACTCACAAATAGGTTGAAAATCAAAAACCCTGATGATGGCCCAAATGCTGTAGTTCAACTTCTCAGAACTTATGGCTTCTCTGATTCCCAATTATGTATCTTTGTAAAGAAACATCCTTCTGTGCTTCTATCAAATGCTGAAAAGACCCTTTTGCCCAAACTCATGTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAATCCTAATTGGGAACACATTTTTTTTTACAACAAGTTTGGAGAAAAACATTATACCTCGTTATCGCATTATTAGGAGCCTTGTTCGCAATGACAAAGAGGTAGTTTCAGCTTTGAAGCGCTGGACATGGAACTTGTATGATGATTCCATGGTTCCAAACATTGAGGTTTTGAGGAAGCTTGGTGTGCCTCAACGTTTCGTTTCCCTTTTGGTATCCAATTTTCCCAATGTAGCATTCTGCGAGCATTCTAGATTTGTTGAGGCTGTTAATATAGTAAAGGAAATGGGGTTTGATCCTTTGAAGTCGAATTTTGTTTTGGCACTTAAAGTAATTGTGAGGATGGACAAAGAGACTTGGGAGTCAAAATTGAAGATTTTTGAGAGGTGGGGATGGTCAAAAGATATCTGTCTTTCGGCATTCCAAAAGTATCCTCTGTATATGGTGACCTCGGATATGAAGATTCTGAAAATAATGAGTTTCTTAGTGAACGATATGGGTTTTACCCCAGAAGACATTGCTAGAAGACCTGGTATTCTGAACCGCAACTTGGAGAAGACATTAATACCTAGATGTTTAGTGGTTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTGATTTGCTCATAGGTACCTTTATTACCATAAGTGAGAAAACATTTTTGGCGAGATATGTTACCCCATTTCAGAAAGATTTGCAACTCTTATTGGATGTATATAAAGGTCAGAAGTCAGAGTGA 1152 0.3689 MLLFSDSMLKFNLFHVFNHSHTTLHYTVTVHCRNHFSNNLSVCNTNQDDSFKLTNLVNSCGLSPEKALKLTNRLKIKNPDDGPNAVVQLLRTYGFSDSQLCIFVKKHPSVLLSNAEKTLLPKLMFLQSIGVSTTDLPKILIGNTFFFTTSLEKNIIPRYRIIRSLVRNDKEVVSALKRWTWNLYDDSMVPNIEVLRKLGVPQRFVSLLVSNFPNVAFCEHSRFVEAVNIVKEMGFDPLKSNFVLALKVIVRMDKETWESKLKIFERWGWSKDICLSAFQKYPLYMVTSDMKILKIMSFLVNDMGFTPEDIARRPGILNRNLEKTLIPRCLVVKILKSRGLIKSDLLIGTFITISEKTFLARYVTPFQKDLQLLLDVYKGQKSE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01480 383 Pfam mTERF 87 292 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 Pfam mTERF 249 359 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 SMART mt_12 240 270 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 SMART mt_12 137 168 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 SMART mt_12 173 201 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 SMART mt_12 206 236 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 PANTHER CGI-12 PROTEIN-RELATED 53 365 IPR003690 GO:0003690|GO:0006355
Trre5g01480 383 Gene3D Transcription termination factor 3, mitochondrial 168 371 IPR038538 -
Trre5g01480 383 FunFam Mitochondrial transcription termination factor-like 151 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01480 Trre-Chr5 10685576 10686727 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01480 mTERF 8.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01480 K15032 - gmx:106799612 406.371