Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01479 ATGTTGTTGTTTTCTGATTCAATGTTAAAATTCAATCTCTTTCATGTTTACACTCATAATGTTACTGTTCATTGCCGCAATGATTTTTCTAATAATTTATCTGTTTCCAACACAAATCAAGATGATTCATTTAAGCTAACCAGTATCTTAAATTCATCTGGGTTGTCCCCTGAAAAAGCCCTTACACTCACAAATAGGTTGAAACTTAGAAAATATGATGATGGCCCAAATGCTGTAATTCAACTTTTCAGAAACTATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAAACACCCTTTAGTGCTTTTATCAAACCCTGAAAAGACCCTTTTGCCTAAACTCAACTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAGTCTTAATTGGGAATACTTCTTTTTTAGCAACAAGTTTGGAGAAAAACACTATACCTCGTTATCACATTATTAGGAGCATTGTTCGTGATGATAAAAAGGTAGTTTCGGTTTTTAGGCGTTGGACATGGAACTTGTACAGTGATTCCTTGGTTCCAAACATTGAGGTTTTGAGGAAGCTTGGTGTTCCTCAAAGTTCTGTTCCCATTTTGGTATCCAATTTTCCCAATGTAGCATTCAGCGACCATTCTAGATTTGTTGAGGCTGTTAATTTAGTAAAGGAAATGGGATTCGATCCTTTGAAGTCGAATTTTGTTATGGCACTTAACACAATTGTATTGATGGACAAAGAGACATGGGAATCAAAATTGAAGAATTTTGAGAGGTGGGGATGGTCGAAAGATATCTGTCTTTTGGCATTCCAAAAGTATCCTCAGTTTATGATGGTGTCAGAAAAAAAGATTACGAAAATAATGAATTTCTTGGTGAACGATATGGGTCTTACCCCAGAAGACATTGCTAGAATGCCTGGGATTCTAATGTGCAGCTTCGAGAAGACAATTGTTCCTAGATGTGAAGTTATTAACATTTTGAAGTCAAGGGGTTTGATAAAGAGTGATTTGCTCATAGGTACCTTTATTACCATAAGTGAGAAAATATTTTTGGCGAGATATGTTACCCGATTTCAGAAAGATTTGCCACTCTTATTGGATGTATATAAAGGTCTGAAGTCAGATTGA 1131 0.359 MLLFSDSMLKFNLFHVYTHNVTVHCRNDFSNNLSVSNTNQDDSFKLTSILNSSGLSPEKALTLTNRLKLRKYDDGPNAVIQLFRNYGFSDSQLSTLVKKHPLVLLSNPEKTLLPKLNFLQSIGVSTTDLPKVLIGNTSFLATSLEKNTIPRYHIIRSIVRDDKKVVSVFRRWTWNLYSDSLVPNIEVLRKLGVPQSSVPILVSNFPNVAFSDHSRFVEAVNLVKEMGFDPLKSNFVMALNTIVLMDKETWESKLKNFERWGWSKDICLLAFQKYPQFMMVSEKKITKIMNFLVNDMGLTPEDIARMPGILMCSFEKTIVPRCEVINILKSRGLIKSDLLIGTFITISEKIFLARYVTRFQKDLPLLLDVYKGLKSD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01479 376 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 SMART mt_12 166 194 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 Pfam mTERF 241 351 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 Pfam mTERF 80 229 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 Gene3D Transcription termination factor 3, mitochondrial 161 363 IPR038538 -
Trre5g01479 376 PANTHER CGI-12 PROTEIN-RELATED 49 358 IPR003690 GO:0003690|GO:0006355
Trre5g01479 376 FunFam Mitochondrial transcription termination factor-like 144 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01479 Trre-Chr5 10680737 10681867 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01479 mTERF 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01479 K15032 - gmx:106799612 404.06