Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01474 ATGGACAAACATTCTGGGGATTCTCTGCCAGTTCATGGTGCTGCAGGGCTGTCTGGGATTTCGTCGCTTAATATACCGAATAAAGTGGGAAGCAGTGCATGGAGAATACCGCACACCACTGATGTATTTCATGATTCGAATGATGTTAGCTTGTTTTCTACTTCGCTGCCTGTTCTTCCACATGAAAAGTTAAATTTGACTGATTCTGAACAAGATTCTGAACAACCGGTGGATGATAACTTGCTAACAATAGGAAAAGTTCACAAAGAGGACGAAGGACATGACCCTTTTGATGATGATTTTGAAACCAGCGCCATTGGAAACTTGCTTCCTGATGATGAAGAAGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTAGTGGGTTACCAAATCAACTTGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGTCTTAGTTTTGGTATTTCAAAGATGAGCATATCCGATGGGATTGCTTCAAATGGTATTGGACCTTATGCAATCCCGAATGGTGTGGCAACAGTGGCTGGGGAGCATCCATACGGTGAGCATCCATCTAGGACATTGTTTGTTCGAAACATCAACAGTAATGTTGAGGATTCTGAATTAAGAACTCTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCACAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCCTGAGACGAAGAAAGCTTGATATTCACTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATAAACCAAGGAACTCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGACGACCTTCGCCAAATATTTGGAGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCGTTGAATCGAAGTGACATTGCTGGAAAACGCATAAAACTTGAACCTAGCCGTCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGACTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGAAGTCAAGTGGGTTCACCTATTGCACATTCTCCCCCAGGCAATTTTTTCACAGGTAGCTGGGCGCAATTTAGTAGTCCTGTTGAACCTAATCCATTAGGTTCTTATAGCAAGTCCCCTGGTTTGGGTCAGGCCAGCCCTATAAGTACCAACCATTTATCTGGATTGGCTGCAATTCTTTCCCCGCATGCATCAACATCTCCCAAAATTGCGCCTATTGGCAAGGACCCTGGAAGAGTTTCAAATCATATGTTTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCCTTTCCTGAAAAAAAAGTAAATGCAAGTCCTAGGCCTATATCTGCTTTTGGTGAAACAAATTCAAGTTCATCGAGTGTTGGAACATTGTCTGGTCCCCAATTTCTTTGGGGAAGCCCGACTCCTTACTCAGAGCAGTCAAACACATCTGCCTGGTCTGCATCTTCCCTTGGGCATCCATTTACATCTAGTAGCCAAAGGCAGGGTTTCCCATACACAGGTCATCGCAATCCTTTTATTGGCTCTCAGCACCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGAACGAAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCTCTCATGAGTCCCATTGGATTTGGGAATTCAAATCATGGTGATGGAAATTTTATGATGAACATGGGTTCCCGTTCATCTGTCGGGCATGGTCTTGGCCTTTCAGCAACTACTAGTGAAATTGGTTCACCTAATTTCGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTTTGTATGCTGGACCAGGATTATCTAGCATTGAGGGATTTGGTGAGCGTGGACGAAGTAGGCGACCTGACAATAATGTGAACCAAATTGAGAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCATCAGTGGTGAAGATACAAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGGACTTATGATTTCCTCTACTTGCCAATTGACTTTAAAAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATTGTCGCGTTCTATAAGGCCTTTAATGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTAGGCCGATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGCATTCGTCAACCGGATGGATCTTACTCTGGTGATATGTTGGAGAGCCCGAAGGGCAATTTGGACGAGAACCTCGAGAAAGAATAA 2592 0.4228 MDKHSGDSLPVHGAAGLSGISSLNIPNKVGSSAWRIPHTTDVFHDSNDVSLFSTSLPVLPHEKLNLTDSEQDSEQPVDDNLLTIGKVHKEDEGHDPFDDDFETSAIGNLLPDDEEELLAGIMDDFDLSGLPNQLEDLDENDLFVNGGGFEMDFEPQESLSFGISKMSISDGIASNGIGPYAIPNGVATVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELEQDEARTFRSQVGSPIAHSPPGNFFTGSWAQFSSPVEPNPLGSYSKSPGLGQASPISTNHLSGLAAILSPHASTSPKIAPIGKDPGRVSNHMFANSGSTQGVAFQHSISFPEKKVNASPRPISAFGETNSSSSSVGTLSGPQFLWGSPTPYSEQSNTSAWSASSLGHPFTSSSQRQGFPYTGHRNPFIGSQHHHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNHGDGNFMMNMGSRSSVGHGLGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGLSSIEGFGERGRSRRPDNNVNQIESKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNLDENLEKE 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01474 863 SMART rrm1_1 287 355 IPR000504 GO:0003723
Trre5g01474 863 SMART rrm1_1 705 781 IPR000504 GO:0003723
Trre5g01474 863 SMART rrm1_1 202 270 IPR000504 GO:0003723
Trre5g01474 863 SUPERFAMILY RNA-binding domain, RBD 705 790 IPR035979 GO:0003676
Trre5g01474 863 CDD RRM3_MEI2_like 706 791 IPR034454 -
Trre5g01474 863 CDD RRM2_MEI2_like 285 355 - -
Trre5g01474 863 MobiDBLite consensus disorder prediction 529 554 - -
Trre5g01474 863 Gene3D - 189 285 IPR012677 -
Trre5g01474 863 Gene3D - 286 382 IPR012677 -
Trre5g01474 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Trre5g01474 863 FunFam Protein MEI2-like 1 285 380 - -
Trre5g01474 863 CDD RRM1_MEI2_like 200 276 IPR034453 -
Trre5g01474 863 Pfam RNA recognition motif 2 703 799 IPR007201 -
Trre5g01474 863 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Trre5g01474 863 MobiDBLite consensus disorder prediction 529 574 - -
Trre5g01474 863 Gene3D - 697 792 IPR012677 -
Trre5g01474 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Trre5g01474 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Trre5g01474 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Trre5g01474 863 FunFam MEI2-like protein 5 isoform 2 190 284 - -
Trre5g01474 863 PANTHER RNA RECOGNITION MOTIF-CONTAINING 98 834 - -
Trre5g01474 863 MobiDBLite consensus disorder prediction 844 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01474 Trre-Chr5 10596363 10602176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01474 196 514 Eukaryotic Initiation Factors Gene Family AT3G16380 22.571 1.66e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01474 - - gmx:100812324 1497.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01474 5 10596363 10602176 Trre5g01474 5 10596363 10602176 ECH