Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01473 ATGGACAAACATTCTGGGGATTCTCTGCCAGTTCATGGTGCTGCAGGGCTGTCTGGGATTTCGTCGCTTAATATACCGAATAAAGTGGGAAGCAGTGCATGGAGAATACCGCACACCACTGATGTATTTCATGATTCGAATGATGTTAGCTTGTTTTCTACTTCGCTGCCTGTTCTTCCACATGAAAAGTTAAATTTGACTGATTCTGAACAAGATTCTGAACAACCGGTGGATGATAACTTGCTAACAATAGGAAAAGTTCACAAAGAGGACGAAGGACATGACCCTTTTGATGATGATTTTGAAACCAGCGCCATTGGAAACTTGCTTCCTGATGATGAAGAAGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTAGTGGGTTACCAAATCAACTTGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGTCTTAGTTTTGGTATTTCAAAGATGAGCATATCCGATGGGATTGCTTCAAATGGTATTGGACCTTATGCAATCCCGAATGGTGTGGCAACAGTGGCTGGGGAGCATCCATACGGTGAGCATCCATCTAGGACATTGTTTGTTCGAAACATCAACAGTAATGTTGAGGATTCTGAATTAAGAACTCTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCACAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCCTGAGACGAAGAAAGCTTGATATTCACTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATAAACCAAGGAACTCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGACGACCTTCGCCAAATATTTGGAGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCGTTGAATCGAAGTGACATTGCTGGAAAACGCATAAAACTTGAACCTAGCCGTCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGACTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGAAGTCAAGTGGGTTCACCTATTGCACATTCTCCCCCAGGTAGCTGGGCGCAATTTAGTAGTCCTGTTGAACCTAATCCATTAGGTTCTTATAGCAAGTCCCCTGGTTTGGGTCAGGCCAGCCCTATAAGTACCAACCATTTATCTGGATTGGCTGCAATTCTTTCCCCGCATGCATCAACATCTCCCAAAATTGCGCCTATTGGCAAGGACCCTGGAAGAGTTTCAAATCATATGTTTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCCTTTCCTGAAAAAAAAGTAAATGCAAGTCCTAGGCCTATATCTGCTTTTGGTGAAACAAATTCAAGTTCATCGAGTGTTGGAACATTGTCTGGTCCCCAATTTCTTTGGGGAAGCCCGACTCCTTACTCAGAGCAGTCAAACACATCTGCCTGGTCTGCATCTTCCCTTGGGCATCCATTTACATCTAGTAGCCAAAGGCAGGGTTTCCCATACACAGGTCATCGCAATCCTTTTATTGGCTCTCAGCACCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGAACGAAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCTCTCATGAGTCCCATTGGATTTGGGAATTCAAATCATGGTGATGGAAATTTTATGATGAACATGGGTTCCCGTTCATCTGTCGGGCATGGTCTTGGCCTTTCAGCAACTACTAGTGAAATTGGTTCACCTAATTTCGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTTTGTATGCTGGACCAGGATTATCTAGCATTGAGGGATTTGGTGAGCGTGGACGAAGTAGGCGACCTGACAATAATGTGAACCAAATTGAGAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCATCAGTGGTGAAGATACAAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGGACTTATGATTTCCTCTACTTGCCAATTGACTTTAAAAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATTGTCGCGTTCTATAAGGCCTTTAATGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTAGGCCGATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGCATTCGTCAACCGGATGGATCTTACTCTGGTGATATGTTGGAGAGCCCGAAGGGCAATTTGGACGAGAACCTCGAGAAAGAATAA 2577 0.4234 MDKHSGDSLPVHGAAGLSGISSLNIPNKVGSSAWRIPHTTDVFHDSNDVSLFSTSLPVLPHEKLNLTDSEQDSEQPVDDNLLTIGKVHKEDEGHDPFDDDFETSAIGNLLPDDEEELLAGIMDDFDLSGLPNQLEDLDENDLFVNGGGFEMDFEPQESLSFGISKMSISDGIASNGIGPYAIPNGVATVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELEQDEARTFRSQVGSPIAHSPPGSWAQFSSPVEPNPLGSYSKSPGLGQASPISTNHLSGLAAILSPHASTSPKIAPIGKDPGRVSNHMFANSGSTQGVAFQHSISFPEKKVNASPRPISAFGETNSSSSSVGTLSGPQFLWGSPTPYSEQSNTSAWSASSLGHPFTSSSQRQGFPYTGHRNPFIGSQHHHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNHGDGNFMMNMGSRSSVGHGLGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGLSSIEGFGERGRSRRPDNNVNQIESKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNLDENLEKE 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01473 858 MobiDBLite consensus disorder prediction 376 425 - -
Trre5g01473 858 CDD RRM2_MEI2_like 285 355 - -
Trre5g01473 858 PANTHER RNA RECOGNITION MOTIF-CONTAINING 98 829 - -
Trre5g01473 858 SUPERFAMILY RNA-binding domain, RBD 700 785 IPR035979 GO:0003676
Trre5g01473 858 CDD RRM3_MEI2_like 701 786 IPR034454 -
Trre5g01473 858 Coils Coil 857 858 - -
Trre5g01473 858 Gene3D - 286 382 IPR012677 -
Trre5g01473 858 SMART rrm1_1 287 355 IPR000504 GO:0003723
Trre5g01473 858 SMART rrm1_1 700 776 IPR000504 GO:0003723
Trre5g01473 858 SMART rrm1_1 202 270 IPR000504 GO:0003723
Trre5g01473 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Trre5g01473 858 Pfam RNA recognition motif 2 698 794 IPR007201 -
Trre5g01473 858 CDD RRM1_MEI2_like 200 276 IPR034453 -
Trre5g01473 858 FunFam Protein MEI2-like 1 285 380 - -
Trre5g01473 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Trre5g01473 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Trre5g01473 858 MobiDBLite consensus disorder prediction 524 549 - -
Trre5g01473 858 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Trre5g01473 858 MobiDBLite consensus disorder prediction 839 858 - -
Trre5g01473 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Trre5g01473 858 FunFam MEI2-like protein 5 isoform 2 190 284 - -
Trre5g01473 858 Gene3D - 189 285 IPR012677 -
Trre5g01473 858 Gene3D - 692 787 IPR012677 -
Trre5g01473 858 MobiDBLite consensus disorder prediction 524 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01473 Trre-Chr5 10596363 10602176 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01473 196 509 Eukaryotic Initiation Factors Gene Family AT3G16380 23.782 8.39e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01473 - - gmx:100812324 1503.42