Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01461 ATGCTTCCAAACATGGAGCTTCCAAATGAAAGTGGAGAAGGATCTGCTCAAAAGAAATTGGGAAGAGGAAAAATTGAAATCAAGAGGATTGAGAACACAACCAATAGGCAAGTCACTTTTTGCAAACGCCGCAACGGATTGCTGAAGAAAGCCTATGAATTATCTGTACTTTGTGATGCTGAAGTTGCTCTCGTTGTTTTCTCAACTCGTGGTCGTTTGTATGAGTATGCTAACAACAGTGTAAGAGCAACTATTGAGAGGTACAAAAAAGCATGTGCTGCTTCCACTAACACAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAAATTCGTGACATTCAGAATCTAAATAGACATATCCTTGGTGAAGCTTTGGGATCTTTGAGTCTCAAGGAACTAAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACTTTGTTGGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTACGAGCTAAGATAGCTGAACATGAAAGAGCTCAACAACAGCAACAAAATTTGATGCCAGAAACAATGTGTGAGTCCTTACCTTCACAAACATATGACCGAAATTTCTTTCCGGTTAATCTTCTTGGATCGGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCTCTCCAACTTGTGTGA 738 0.4011 MLPNMELPNESGEGSAQKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLLADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPETMCESLPSQTYDRNFFPVNLLGSDQQQYSRQDQTALQLV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01461 245 Coils Coil 109 129 - -
Trre5g01461 245 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g01461 245 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g01461 245 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Trre5g01461 245 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Trre5g01461 245 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Trre5g01461 245 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Trre5g01461 245 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Trre5g01461 245 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Trre5g01461 245 Coils Coil 179 199 - -
Trre5g01461 245 SUPERFAMILY SRF-like 21 100 IPR036879 GO:0003677|GO:0046983
Trre5g01461 245 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Trre5g01461 245 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g01461 245 CDD MADS_MEF2_like 21 95 IPR033896 GO:0000977|GO:0045944
Trre5g01461 245 Gene3D - 32 102 IPR036879 GO:0003677|GO:0046983
Trre5g01461 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 203 - -
Trre5g01461 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01461 Trre-Chr5 10453782 10460473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01461 2 245 MADS-box Gene Family AT3G58780 69.841 4.59e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre5g01461 K-box 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01461 K09264 - gmx:100808734 428.328