Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01455 ATGTCGTCGTCAAATTCACCTTGTGCTGCGTGCAAGTATCTCCGACGAAAGTGCACCCAAGAATGCGATTTTGCTCCCTATTTCCTCCCCGAAAGTCCACAGAGATTCGCTAATGTGCACCGCGTGTTCGGTGCAAGCAATGTCGCTAAGCTCTTAAAAGAGCTTAACGCGGCTGACCGTGAAGATGCAGTGAAATCCCTAGCGTACGAGGCAGAGTCTCGTATAAAAGATCCGGTCTATGGCTGTGTTGGTTTGATCTCGATGCTCCAACAACGGTTGAAAGAAATCCAACAAGAGCTCCATGCGGCGAAAAGGGAGCTCTCCAGTTACAATCTGAGTCCTCAAACTATGCAGTACTTGTTGGCGCATTCCGGAACGGTTGTGATGCCTCAGCACCAGCAGCAGCAGCAACAATGGAATAATGCGCAATTCGCGGGTTTTGCGAATAATTTTCCTCCTGAGATTGTTGGAGGAGGTGGGATAGTTATTCGTGATGTTCCGCAGCAGCAACAGAATCAGGAGCTTCTAGAAGCTCATCAATTATTTGCTGCTCAGCAGCAGTATATGCTTAGGTTTGGTGGTGGACATCAGATGGGTGCTGGTGGCGGTGTTGCCGCTGTTTCTGATCATGCTGATGGGGGTCAGTCATTAGGAATTGGAAATTTTGATAATGCTGCTGGTGCTGGTGGTGGCGGTGGTGACGCCGGGGTTGGTTATTATCAGATTCAGCAACAAGGAGGAGGAGAACAACAACAACAACAACAACAACAACAACAGAATTATCATCATAATGCTGGTGTTGCTGCTGCTGCTGCTCATGGTAATCCAATTGAGGCACAGCTTTTGTTGTCTCCACAGAATCAGGAAAATGGTGAGGATGAATATTGGGTTTTGTTGATATGTGAATATGAGGATTGA 918 0.4739 MSSSNSPCAACKYLRRKCTQECDFAPYFLPESPQRFANVHRVFGASNVAKLLKELNAADREDAVKSLAYEAESRIKDPVYGCVGLISMLQQRLKEIQQELHAAKRELSSYNLSPQTMQYLLAHSGTVVMPQHQQQQQQWNNAQFAGFANNFPPEIVGGGGIVIRDVPQQQQNQELLEAHQLFAAQQQYMLRFGGGHQMGAGGGVAAVSDHADGGQSLGIGNFDNAAGAGGGGGDAGVGYYQIQQQGGGEQQQQQQQQQQNYHHNAGVAAAAAHGNPIEAQLLLSPQNQENGEDEYWVLLICEYED 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01455 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 174 - -
Trre5g01455 305 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Trre5g01455 305 MobiDBLite consensus disorder prediction 244 267 - -
Trre5g01455 305 Coils Coil 86 113 - -
Trre5g01455 305 MobiDBLite consensus disorder prediction 244 264 - -
Trre5g01455 305 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01455 Trre-Chr5 10377558 10378551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01455 1 134 AS2 family AT5G66870 63.433 8.54e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g01455 LOB 1.6e-39 No_clan