Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01451 ATGGCAACTGAAGAGCATAATGTCGCAAAGGCTGAGGAATTTAAAGTCCTTGCTAATGAAGCATTCAAAGATCGGAAATTTTCCCATGCTATTGATCTATATACACAAGCAATTGAGCTAAACGGTCAAAATGCAGTTTACTATGCTAATCGTGCCTTTGCCCATCTTCGGCTTGAGGAATATGGTAGTGCAATACTAGATGCTACAAAGGCTATCGAAGTTGATCCGAAGTATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGGGCTAGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAGTTGAAGGAATGTGAAAAAGCAGTTATGAAACTGAAATTTGAAGAAGCAATTGCTGTACCAGGATCTGTGAAGCGTCCAATAGCTGAATCCATTGATTTCCATTCAATAGGAAAGGGTCGCAATTCTTCGGTGCCAACCGAAGTTGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTCATGTTTGGCAGGACATCAAAGACCACAGTAGTAGCTACAATTATGGTTGTTTTGCTGTTGGTCCTTGTGGCGTTTTGGTGGAGTGGCTCCAATACTGATGTTGAGCCACAGTATTCTGGAGCAAGAATAGAAGGGGATGTTATTACTTTGGATTTTGTAAAGAAAATGATGGAGGATTTCAAGAAACAGAAGTGCTTGCATAAACGGTATGCATTCCAGATTGTGTTGCAAACAAAAGAGATGTTACAAGCTTTGCCTTCTCTTGTTGACATAACCGTTCCTCAGGGAAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTTTTATGATCTTCTGAATATTTTTGAGCTCAATGGGCTTCCTTCAGAAGAAAACCCATATCTATTTAATGGTGACTTTGTGGATAGAGGATCGTTTTCTTTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGAAACATTTGTTGAACTATTTGCGGAAGTGTTCTGCTGTTTACCTTTGGCTCATGTGATAAATGAGAAAGTTTTCATAGTCCATGGAGGTCTTTTTAGTGTTGATGGTGTCAAACTCTCTGAAATCCGATCAATTAATCGGTTTTGTGAGCCTCCAGAGGAAGGGTTGATGTGCGAATTGTTATGGAGCGATCCACAACCTCTCCCTGGAAGAGGCCCAAGCAAGCGTGGTGTAGGCCTTTCTTTCGGTGGGGATGTTACGAAAAGGTTCTTGAAGGATAATAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACCGTATTTTCTGCTCCAAACTACTGTGATCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCGCCTGATTTGAAACCTAACATTATTACATTCGCAGCAGTGCCACACCCTGACGTTAAGCCAATGGCTTATGCAAACAACTTCCTCAGGATGTTTTCATAA 1623 0.4097 MATEEHNVAKAEEFKVLANEAFKDRKFSHAIDLYTQAIELNGQNAVYYANRAFAHLRLEEYGSAILDATKAIEVDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAVPGSVKRPIAESIDFHSIGKGRNSSVPTEVAIAAVTVAVMAVVVMFGRTSKTTVVATIMVVLLLVLVAFWWSGSNTDVEPQYSGARIEGDVITLDFVKKMMEDFKKQKCLHKRYAFQIVLQTKEMLQALPSLVDITVPQGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFIVHGGLFSVDGVKLSEIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLKDNNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIITFAAVPHPDVKPMAYANNFLRMFS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01451 540 Gene3D - 204 539 IPR029052 -
Trre5g01451 540 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Trre5g01451 540 FunFam Serine/threonine-protein phosphatase 5 201 539 - -
Trre5g01451 540 Pfam Calcineurin-like phosphoesterase 278 472 IPR004843 GO:0016787
Trre5g01451 540 PRINTS Serine/threonine phosphatase family signature 405 432 IPR006186 GO:0016787
Trre5g01451 540 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Trre5g01451 540 PRINTS Serine/threonine phosphatase family signature 308 335 IPR006186 GO:0016787
Trre5g01451 540 PRINTS Serine/threonine phosphatase family signature 461 481 IPR006186 GO:0016787
Trre5g01451 540 PRINTS Serine/threonine phosphatase family signature 341 365 IPR006186 GO:0016787
Trre5g01451 540 PRINTS Serine/threonine phosphatase family signature 483 499 IPR006186 GO:0016787
Trre5g01451 540 PRINTS Serine/threonine phosphatase family signature 375 401 IPR006186 GO:0016787
Trre5g01451 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 533 - -
Trre5g01451 540 SUPERFAMILY Metallo-dependent phosphatases 226 534 IPR029052 -
Trre5g01451 540 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Trre5g01451 540 Pfam PPP5 TPR repeat region 211 270 IPR013235 -
Trre5g01451 540 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Trre5g01451 540 PIRSF PPPtase_5 1 540 - -
Trre5g01451 540 CDD MPP_PP5_C 218 533 IPR041753 -
Trre5g01451 540 Pfam Tetratricopeptide repeat 47 77 IPR019734 GO:0005515
Trre5g01451 540 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Trre5g01451 540 SMART pp2a_7 246 522 IPR006186 GO:0016787
Trre5g01451 540 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Trre5g01451 540 SUPERFAMILY TPR-like 6 137 IPR011990 GO:0005515
Trre5g01451 540 SMART tpr_5 11 44 IPR019734 GO:0005515
Trre5g01451 540 SMART tpr_5 79 112 IPR019734 GO:0005515
Trre5g01451 540 SMART tpr_5 45 78 IPR019734 GO:0005515
Trre5g01451 540 Gene3D Tetratricopeptide repeat domain 2 152 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01451 Trre-Chr5 10354438 10363044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01451 281 462 Calmodulin-binding Proteins AT5G63870 37.963 3.98e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01451 K04460 - gmx:100820099 966.837