Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01424 ATGATTTCATCATTGAGACAACCTAGTATTGCGATCAGTGGTTCTGATGTTGTTTTTGGGAAAAGACATGCAACCCTAATTCAACCACGGTCTTTTTTACCATCTTTGATAAGTGAAAAATCACATAGATCTGTTGTTTCATTGAAAAGGCCTCTTCATATTGCATGTCTTGGTGTTGGAAATTTTGGGTCAGTGAAAAATTTTGAGACAGAGAAGAGTTTTGAAAAGGGTGATTTGGTTAAGTGTGGTGCTTATGAAGCTGATAGATCAGAGGTTGAAGATGCAGGAACACCATCAGAGGCTGCAAAAAAAGTGAAAATTGGAATATATTTTGCAACTTGGTGGGCTTTGAATGTTGTTTTCAATATTTATAATAAGAAGGTTTTGAATGCTTACCCTTACCCTTGGCTCACATCAACTCTGTCATTAGCTTGTGGTTCTCTTATGATGTTGATTTCTTGGGCCACTAGGATAGCAGAAGCTCCTAAGACTGATCTTGAGTTTTGGAAGACTTTGTTTCCTGTTGCTGTTGCGCACACAATTGGACATGTAGCGGCTACGGTTAGTATGTCCAAAGTTGCAGTATCATTTACACATATCATCAAGAGTGGTGAGCCTGCTTTTAGTGTTCTGGTTTCAAGATTTATTTTGGGTGAAACCTTCCCCGTGCAAGTTTATCTGTCTTTACTTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACTGAGCTCAATTTCAATATGATTGGTTTTATGGGGGCTATGATATCAAATTTGGCATTTGTGTTCAGGAACATCTTTTCGAAAAAGGGAATGAAGGGAAAATCTGTTAGCGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCAATTCTCACACCCTTTGCAATTGCCGTGGAAGGACCAGCTGCGTGGGCTGCTGGATATCAAACAGCTATGGCTGAAATTGGACCACATTTCCTATGGTGGGTAGCAGCTCAGAGTATATTCTATCATCTATACAATCAAGTGTCTTACATGTCATTGGATGAGATCTCTCCCTTGACATTTAGCATTGGAAACACCATGAAACGTATATCTGTCATAGTATCTTCAATTATCATTTTCCACACACCAGTTCAACCCGTCAATGCTCTTGGAGCCGCAATTGCTGTCTTCGGGACCTTCCTTTACTCACAGGCAAAACAATAG 1197 0.3977 MISSLRQPSIAISGSDVVFGKRHATLIQPRSFLPSLISEKSHRSVVSLKRPLHIACLGVGNFGSVKNFETEKSFEKGDLVKCGAYEADRSEVEDAGTPSEAAKKVKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLACGSLMMLISWATRIAEAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFPVQVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLAILTPFAIAVEGPAAWAAGYQTAMAEIGPHFLWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAIAVFGTFLYSQAKQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01424 398 Pfam Triose-phosphate Transporter family 106 394 IPR004853 -
Trre5g01424 398 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 106 397 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre5g01424 398 PANTHER SOLUTE CARRIER FAMILY 35 106 397 - -
Trre5g01424 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 149 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01424 Trre-Chr5 10078956 10082985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01424 32 398 Antiporters AT1G61800 77.333 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01424 K15283 - gmx:732659 664.07