Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01411 ATGAGTTGTTTTCCATGTTGTGCACCATCACAAGAAAGGATCAACAGAAAGTCATTGAAGAAAAGTATTAAGGAATACCATGATGCAAAAACTTTAACCTCATTTGCTAATATCTCTTTTAAAACTGATAGTGGCAAGAGAAGGTTTATAGCAGATGAGATAGCAAAGCTTGGAAAAGGAAATGCTACCTCTAAGATTTTTACGTATCGCGAACTATGTACTACAACTCAGAATTTTCACCCTACCAATATGATTGGAGAAGGAGGTTTTGGAAGAGTATACAAAGGAACAATTAAAGACACAGATCAAGTTGTTGCTGTGAAGCAACTTGACAGAAATGGTTTTCAAGGGAATCGAGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTTTTGCATCACCCTAACCTTGTCAATTTAGTAGGGTATTGTGCTGAAGGTGATCAAAGGGTTTTGGTATATGAATATATGCCTAATGGTTCCTTAGAAGATCACTTGCTTGATTTAGCTCCTGGTAAAAAGCCTTTGGACTGGAAGACAAGAATGAAAATTGCAGCAGGAGCGGCAAAAGGGCTTGAGTATTTACACGAACAAGCAAACCCTCCGGTGATATATCGCGATTTCAAAGCATCAAATATACTATTAGATGAAAACTACAATCCAAAGCTTTCTGACTTTGGACTAGCAAAGCTCGGCCCGACCGGTGATAAAACACATGTATCGACAAGAGTGATGGGAACTTATGGCTATTGTGCTCCCGAGTATGCATCAACAGGGCAATTAAGTACAAAATCAGATGTGTATAGTTTTGGAGTCGTGTTTTTGGAGATTATCACAGGAAGAAGAGTCATTGACAATTCAAGACCATCAGAAGAACATAATTTAGTCATTTGGGCACAACCTCTTCTAAGAGACAGAAAGAAATTCACACAAATGGCAGATCCATTGCTAGAAGATAAATACCCTATAAAGAGTCTATACCAAGCTCTAGCTGTTGCAGCAATGTGTCTCCAAGAGGAAGCTGATACTCGACCTTTAATCAGTGATGTAGTTACAGCTCTTGAATTTTTAGCAAAGAAGAAAGATGATGATGGAGAAAATGTTACAAAAGAGTCTCTTTCTTCCCAAAGTGAAAGTGATAATGGAAACAATGAATCTAATGAAGTAAAGAATGATGAAGACGAAGAGGATGAGGATGAGGATGAGGATGGTGATGACGATGATGAAGATGAAGAGGATGATGATGACGATGATGACGACGACGATGAAGATGTTAAAGTTAAAAGAAGACATAGTCAATGA 1299 0.3788 MSCFPCCAPSQERINRKSLKKSIKEYHDAKTLTSFANISFKTDSGKRRFIADEIAKLGKGNATSKIFTYRELCTTTQNFHPTNMIGEGGFGRVYKGTIKDTDQVVAVKQLDRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCAEGDQRVLVYEYMPNGSLEDHLLDLAPGKKPLDWKTRMKIAAGAAKGLEYLHEQANPPVIYRDFKASNILLDENYNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLSTKSDVYSFGVVFLEIITGRRVIDNSRPSEEHNLVIWAQPLLRDRKKFTQMADPLLEDKYPIKSLYQALAVAAMCLQEEADTRPLISDVVTALEFLAKKKDDDGENVTKESLSSQSESDNGNNESNEVKNDEDEEDEDEDEDGDDDDEDEEDDDDDDDDDDEDVKVKRRHSQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01411 432 MobiDBLite consensus disorder prediction 362 432 - -
Trre5g01411 432 MobiDBLite consensus disorder prediction 369 383 - -
Trre5g01411 432 SUPERFAMILY Protein kinase-like (PK-like) 65 361 IPR011009 -
Trre5g01411 432 SUPERFAMILY ARM repeat 333 424 IPR016024 -
Trre5g01411 432 CDD STKc_IRAK 85 354 - -
Trre5g01411 432 Gene3D Phosphorylase Kinase; domain 1 64 155 - -
Trre5g01411 432 PANTHER OS07G0668900 PROTEIN 3 367 - -
Trre5g01411 432 ProSiteProfiles Protein kinase domain profile. 79 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01411 432 Pfam Protein kinase domain 81 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01411 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Trre5g01411 432 FunFam Serine/threonine-protein kinase CDL1-like 50 155 - -
Trre5g01411 432 MobiDBLite consensus disorder prediction 388 421 - -
Trre5g01411 432 Gene3D Transferase(Phosphotransferase) domain 1 156 381 - -
Trre5g01411 432 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Trre5g01411 432 FunFam Serine/threonine-protein kinase PBS1 156 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01411 Trre-Chr5 10001092 10003291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01411 61 361 Glycoside Hydrolase AT3G07070 70.100 1.04e-160 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre5g01411 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01411 - - gmx:100790474 647.121