Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01406 ATGAAGTCATTTAGGGATCTGGGTTTATCTTTTGAATTGTTGGAAACTTGTGACAAACAACTTTTTTGGTATCATCCGACGAAGATTCAGACACAAGTGATTCCCATTGCGCTACAAGGAAAAGAAGATGTGTTTGCAATTTCCCCACCGCGTTCTGGTAAGTTTGGGGCTTTTATTCTTCCTATATTGCATACTCTCTTAGAAACCGGACCGAACCTAAACACTTTCTTTGCTTGTGTGCTGTCTCCTAAATGGGAGCTTGCTTGTCAAATTGCTGAAGGATTTACTGGTCTAGGATCTCGATTTGGTGTCAAGTGTGCTACCCTTGCTGAATCGTTCGACATGGCAAATCAAGCCTACCAGATTTCACAGAAACCTCATATTATTGTTGCGACCCCTGGAGAAATCTTGAATAACCTAAGACACACTCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACCTGGTTATAGATGATGCACACCTGCTGTTGAATGATCACTCTGAGCAACAACTATGTGATATTTCAGAAATGATTCCTACTGAGCCGACAACATTTCTTTTTTCATCTACATTGACAGAGAAGGTGCATACAATCCAAAGTATGTGTTTAAGGAATCCTGTGAAGATTGACTTATCTTCAAAATCTTCTATTGTGGACACACTGCGGCAGCAACGGTGTTCTATGCAAGCAGCAAGCCATAAGGATTGCTACCTTGCATACACTCTCTCTGAAATGATGGGAAGAAAATCAATGGTATGCACTAATAGTTGTGGTACCACGCTTCTTCTGGCTTTGATTCTTAAGAATCTTGGTTTCAGAGCTGTCCCGATTATTATTTTTATGACTCAGGAAAAGAAACGTGAATCCTTGAATGCGTTCAAGTCCGGGGAGTACAGTATTCTCCTTTGTAGTGACGAAGCTAGTAGGGGACTAGATATTCCAGCGGTAGATATGGTGATTAACTATGACATTCCTATGTGTCCAGACGATTATATGTACCGCGTGGGATGGACTACTCATGCTGATGCTGCCATTTTCTTTGTGAGCCCACGTGAAGTGAGACAATTCAATATGATAGAGAGGCATATAGGCATTGCTTTGCCAGTGTATCCTGCACCACGTGAGGACGTTTTACTTTTGGGAAGGGGTGTTAGAGAGGCCGAAGGATTTGCACAAAAGGAAATGAAAGAATTCGGTTGGAAGAGCGGAGGATACTTGGATCAGCAGGAAGTACTACACTAA 1248 0.4167 MKSFRDLGLSFELLETCDKQLFWYHPTKIQTQVIPIALQGKEDVFAISPPRSGKFGAFILPILHTLLETGPNLNTFFACVLSPKWELACQIAEGFTGLGSRFGVKCATLAESFDMANQAYQISQKPHIIVATPGEILNNLRHTQGFSLALGRLKYLVIDDAHLLLNDHSEQQLCDISEMIPTEPTTFLFSSTLTEKVHTIQSMCLRNPVKIDLSSKSSIVDTLRQQRCSMQAASHKDCYLAYTLSEMMGRKSMVCTNSCGTTLLLALILKNLGFRAVPIIIFMTQEKKRESLNAFKSGEYSILLCSDEASRGLDIPAVDMVINYDIPMCPDDYMYRVGWTTHADAAIFFVSPREVRQFNMIERHIGIALPVYPAPREDVLLLGRGVREAEGFAQKEMKEFGWKSGGYLDQQEVLH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01406 415 Gene3D - 1 213 IPR027417 -
Trre5g01406 415 SMART ultradead3 22 226 IPR014001 -
Trre5g01406 415 Gene3D - 218 373 IPR027417 -
Trre5g01406 415 SMART helicmild6 263 338 IPR001650 -
Trre5g01406 415 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 2 31 IPR014014 GO:0003724
Trre5g01406 415 PANTHER RNA HELICASE 2 376 - -
Trre5g01406 415 Pfam DEAD/DEAH box helicase 27 199 IPR011545 GO:0003676|GO:0005524
Trre5g01406 415 Pfam Helicase conserved C-terminal domain 240 339 IPR001650 -
Trre5g01406 415 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 380 IPR001650 -
Trre5g01406 415 CDD SF2_C_DEAD 235 338 - -
Trre5g01406 415 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 211 IPR014001 -
Trre5g01406 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01406 Trre-Chr5 9919129 9923701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01406 1 380 Eukaryotic Initiation Factors Gene Family AT3G19760 22.165 2.65e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01406 K14777 - gmx:100775796 405.601