Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01388 ATGAGTGTGGTAGGGTTTGACATTGGTAATGAGAACTGTGTTATTGCTGTGGCAAAGCATCGTGGGATCGATGTTTTGTTGAATGATGAATCCAAACGGGAAACTCCTGCTGTTGTATGTTTTGGCGAGAAGCAGAGGTTTTTAGGGTCTGCTGGTTCTGCTTCTGCTATGATGCACCCGAAGTCAACGATATCGCAAGTGAAGAGATTTATAGGTAGGAAATTTTGTGACCCTGATATGGAAAGGGATCTGAAAATGCTCCCTCTTGAAACTTCTGAAGGCCCAGATGGTGGTGTTTTGATTCATTTGAAGTATATGGAGGGGACTCATACGTTTACGCCGGTTCAAATAATGTCTATGCTTTTTGCTCACTTGACGACTATGACGGAAAAGGATTTGGAGGCACCCATCTCAGATTGTGTTATTGGTATCCCGTCATACTTCACCGACTTGCAGAGAAGAGCATATCTTGATGCGGCAACAATTGCTGGGTTGAAGCCTTTGAGATTGATACATGATTGTACTGCAACTGCCCTTAGTTATGGAATTTACAAAACAAATTTTCAAAATGATGGTTCAACTTATGTTGCATTTATTGACATTGGTCACTGTGATACTCAAGTCTGCATTGCAGCATTCGAGTTCGGACAAATGAAGATACTTTCACATGCTTTTGATAGGAGCTTAGGGGGGAGGGACTTTGATGAGGTTCTATTTACTCATTTTGCTGAAAAATTCAAGGAACAGTACAGCATTGACGTGTATTCTAACGCCAAGGCATGTATTAGGCTCCGTGCAGCATGTGAGAAACTGAAGAAAGTTTTGAGTGCGAATCCTGAGGCACCGCTAAATATTGAGTGTTTGATGGATGAGAAAGATGTTAAGGGCTTTATCACAAGAGAAGAATTTGAGAATCTCGCATCGGGATTATTGGAGAGAATTTCTGAACCTTGCAATAAAGCATTATTGGATGCCGGCTTGGTTGCAGAGAAGATTGCTTCTGTCGAGCTAGTTGGTTCAGGTTCTAGGATTCCAGCAGTAAGTACATTATTATCTTCTCTATTCAAGAGAGAACCCAGCCGAAAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAATGTGCTATGCTCAGTCCCACATATCGTGTGAGAGAATATGAGGTTCAGGATATTAGTCCTTTTTCATATGGACTTTTATCAGATGAAGGTCCAATTTCAGTAGGACCAAATGGTGTAATTTTGCCAAAAGGCCAACCCATTCCAAGTACTGCACTCCTACGACTCCAGCGAACTAATTTGTTCCATTTGGAAGCTTTCTATGCAAATCCACAAGAACTGCCACCTGGAACAGATCCCAAAATTGGTTGCTTCACGATTGGTCCTTTGCTTGGATCTCAAGGTAGTAAAACAAAAGTTAAAGTTCGACTTCAACTAAATCTGCATGGCATTTTCAGTATTGATTCAGCTAGAATGATCAAGGATCATGCGGATGATCATCATTCAAATTCTGATGCAATGGATGTTGATCCTGTGCCTGAGACCTCAGATAGTACCAATTTTGTTGCCAATGGCGCTGAAGATAGTACCAATAAGTGTGATCCTCCACAAAATCCCGCTGATCATTCAAGAAAAGATAAAGCTAACAGATGGATTCCTATTCCTGTGAATGAGAATATCTATGGTGGAATGACAACGGTAGAAATTTCTGAAGCTCATGATAAAGAAGTCCAGTTAGCCCAACAGGACAGAGCCGTGGAGCTAACCAAAGAAAAGAAGAACACCTTGGAGTCCTATGTTTATGAGACGCGGAGTAAGCTCTTCAACACTTATCGGAGCTTTGCAAGTGAGCTAGAGAGGAATGACATATCTAGGAGTTTGCAAGAGACTGAGGATTGGCTTTATGAGGATGGTGATGATGAAACCGAACACGCTTATACCTCAAAATTGGAAGATCTGAAAAAGCTGGTGGATCCAATTGAGAATCGGTACAAAGATGATGAAGAAAGAGCGCAAGCTATAAAAGAATTATCAACACTCATTTCAGAGATTCACAAGTATTCAGATTCCCTTCCACCCCAGTATAAAGAATTGCTCATCAATGAGAGTAATAACGTAGAGCAGTGGCTAACAGAGAAGGTGCAACAACAAGACTCTTATCCTAAGAATATTGACCCGATATTATGGTCAAGTAATATTAAGGGAGCATCAGAGCATCTCCGAAAGTATGATGCTTTTCCTTTCTGTTTTCCTTTTTAG 2265 0.4115 MSVVGFDIGNENCVIAVAKHRGIDVLLNDESKRETPAVVCFGEKQRFLGSAGSASAMMHPKSTISQVKRFIGRKFCDPDMERDLKMLPLETSEGPDGGVLIHLKYMEGTHTFTPVQIMSMLFAHLTTMTEKDLEAPISDCVIGIPSYFTDLQRRAYLDAATIAGLKPLRLIHDCTATALSYGIYKTNFQNDGSTYVAFIDIGHCDTQVCIAAFEFGQMKILSHAFDRSLGGRDFDEVLFTHFAEKFKEQYSIDVYSNAKACIRLRAACEKLKKVLSANPEAPLNIECLMDEKDVKGFITREEFENLASGLLERISEPCNKALLDAGLVAEKIASVELVGSGSRIPAVSTLLSSLFKREPSRKLNASECVARGCALQCAMLSPTYRVREYEVQDISPFSYGLLSDEGPISVGPNGVILPKGQPIPSTALLRLQRTNLFHLEAFYANPQELPPGTDPKIGCFTIGPLLGSQGSKTKVKVRLQLNLHGIFSIDSARMIKDHADDHHSNSDAMDVDPVPETSDSTNFVANGAEDSTNKCDPPQNPADHSRKDKANRWIPIPVNENIYGGMTTVEISEAHDKEVQLAQQDRAVELTKEKKNTLESYVYETRSKLFNTYRSFASELERNDISRSLQETEDWLYEDGDDETEHAYTSKLEDLKKLVDPIENRYKDDEERAQAIKELSTLISEIHKYSDSLPPQYKELLINESNNVEQWLTEKVQQQDSYPKNIDPILWSSNIKGASEHLRKYDAFPFCFPF 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01388 754 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 568 666 IPR029048 -
Trre5g01388 754 Coils Coil 652 672 - -
Trre5g01388 754 PRINTS 70kDa heat shock protein signature 332 348 - -
Trre5g01388 754 PRINTS 70kDa heat shock protein signature 363 383 - -
Trre5g01388 754 PRINTS 70kDa heat shock protein signature 472 488 - -
Trre5g01388 754 PRINTS 70kDa heat shock protein signature 30 42 - -
Trre5g01388 754 PRINTS 70kDa heat shock protein signature 2 15 - -
Trre5g01388 754 PRINTS 70kDa heat shock protein signature 388 407 - -
Trre5g01388 754 PRINTS 70kDa heat shock protein signature 140 160 - -
Trre5g01388 754 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 551 IPR029047 -
Trre5g01388 754 Gene3D - 38 113 - -
Trre5g01388 754 Gene3D - 566 677 IPR029048 -
Trre5g01388 754 MobiDBLite consensus disorder prediction 499 550 - -
Trre5g01388 754 FunFam Heat shock 70 kDa protein 4 566 676 - -
Trre5g01388 754 FunFam Heat shock 70 kDa protein 4 1 71 - -
Trre5g01388 754 FunFam Heat shock 70 kDa protein 4 109 193 - -
Trre5g01388 754 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Trre5g01388 754 FunFam Heat shock 70 kDa protein 4 230 313 - -
Trre5g01388 754 Gene3D Actin; Chain A, domain 4 230 313 - -
Trre5g01388 754 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 599 IPR029047 -
Trre5g01388 754 MobiDBLite consensus disorder prediction 515 539 - -
Trre5g01388 754 Pfam Hsp70 protein 3 666 IPR013126 GO:0005524|GO:0140662
Trre5g01388 754 FunFam Heat shock 70 kDa protein 4 38 113 - -
Trre5g01388 754 CDD HSPA4_like_NDB 2 381 - -
Trre5g01388 754 Gene3D - 5 374 - -
Trre5g01388 754 PANTHER HSC70CB, ISOFORM G-RELATED 1 743 - -
Trre5g01388 754 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Trre5g01388 754 Gene3D - 186 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01388 Trre-Chr5 9773121 9778116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01388 4 665 Calmodulin-binding Proteins AT3G12580 28.171 1.16e-74 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01388 K09489 - gmx:100808218 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01388 5 9773121 9778116 Trre5g01388 5 9773121 9778116 ECH